MmuINT0113593 @ mm9
Intron Retention
Gene
ENSMUSG00000020435 | Osbp2
Description
oxysterol binding protein 2 [Source:MGI Symbol;Acc:MGI:1921559]
Coordinates
chr11:3617100-3617989:-
Coord C1 exon
chr11:3617797-3617989
Coord A exon
chr11:3617218-3617796
Coord C2 exon
chr11:3617100-3617217
Length
579 bp
Sequences
Splice sites
5' ss Seq
AGGGTGTGT
5' ss Score
4.51
3' ss Seq
GAGTCTCGCTCTGTGTTCAGGAA
3' ss Score
7.84
Exon sequences
Seq C1 exon
GCCTGTAGGGACTTCCTGGAACTAGCTGAGACTCACAGCCGGAAATGGCAGCGGGCTCTAAATTATGAGCAGGAGCAGCGTGTCCACCTGGAAGAGACAATTGAGCAGTTGGCCAAGCAGCACAACAGTCTTGAACGGGCCTTCTGCAACACCCCTGGCGGGCCAGCCAGCTCCAGCAAGAGCTTCAGCGAGG
Seq A exon
GTGTGTGAGAAAGCAGGGTTGGTGGGCTGGTGGGTGCATTCTAGCGCTGCCCTCGCCCCTGGCTTCCCAGCTCGCTCGATACTTCCTTTCTACTGTACCTCTTGGGCTCCATAACCTGTCCCTTAAAGTGGCCTCATGTGGGCTTGTCCTGAGAAGTACAGACTCCCTCTGTGATGCCGCATGTCCCATGCCTGTCACTAACTGGCAAGGTCTCCCACCCACCATGTCTAAGTTCAAAGTCCCATACTTTGAAGTTCAGTGAGCCCAGCTGTTCTCTCTGGGCAGGGTCGGCCAGGTGTCAGGTGGCTGCCTAACTAACATAAGGCTAGGGGTCACCACAGGTGCCCTGGGCAGGAAAGCTGGGCCTCTGACCAAACATGGACAGATCAGGAGGCTTCTGGAAGGAAATGTCTGAGCAATGACGAGTAGAAAAGATGCCCTATCCTCGAAAAGCAAAGTCAGGGCAGCCATAGTGCGGGGTGACCAGGCTCAGGTGTCTAAGGTGGGGCAGGCAAGGCTTTGTCAGGTGGAGGCCGTGTGCGCTATGAGGCTGCAAACTGAGTCTCGCTCTGTGTTCAG
Seq C2 exon
GAAGCTTCTTGACTTCCAAAGGAGAGAACAGTGAGGAAGATGAAGATACTGAGTACTTTGACGCCATGGAAGACTCTACATCTTTCATCACCGTAGTCACTGAGGCCAAGGAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020435-Osbp2:NM_152818:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.397 A=NA C2=0.735
Domain overlap (PFAM):
C1:
PF045528=Sigma54_DBD=PD(35.5=95.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGACTTCCTGGAACTAGCT
R:
TGTCTTCCTTGGCCTCAGTGA
Band lengths:
304-883
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: