HsaINT0118555 @ hg19
Intron Retention
Gene
ENSG00000184792 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:8504]
Coordinates
chr22:31283413-31284327:+
Coord C1 exon
chr22:31283413-31283605
Coord A exon
chr22:31283606-31284209
Coord C2 exon
chr22:31284210-31284327
Length
604 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
AGCTCTGTCTGTGTCTCTAGGAA
3' ss Score
10.78
Exon sequences
Seq C1 exon
GCCTGCAGGGACTTCTTGGAACTAGCAGAGATACACAGTCGGAAATGGCAGCGGGCACTGCAGTATGAGCAGGAGCAGCGCGTGCACTTGGAGGAAACCATTGAGCAGCTGGCGAAGCAGCACAACAGCCTCGAGCGGGCCTTCCACAGTGCCCCTGGCCGGCCGGCCAACCCCTCCAAGAGCTTCATTGAGG
Seq A exon
GTGAGTGGGCAGCCAGGGCAGGGCTGTCCCATGACCTTCTGCCAGCTGGCTCTGCATACACAACTTCTGCGCCCCCACATGCACATCCCTGGCTGTGCCCACATGTGGGCTGGCCTTGGCCAACTCTTGACTGCCTCTTCGTGGTTTTGTATCTCCCATGTCCATCACCCACTGGCAACAGTTTGTCTGCACCTAGGTTCACATTCTCAAGAGTTAAATTTAATGAGCCCAGCTGTCCCCTGTGTGACAGGGGTGTCCTGGTGCCAGGTGGCCACCCACCTAGCCTTGGGTTGGGGGTCATGGGGACCCTGGACAGGGGTCCATCAGAAAGGGAAGCTGGGCCACAGAAAGACTGACCCACATGTTGAGAGATCGGGGGGGCTTCCAGAAAGAGGCTCCTGTGCGGTGAATGCGTTGAAAGCACATGATTCTAGCAGAGGGAGCAAGGGTGGCCGCAGCCCAGGGAATCAGGGCTGCCCAGGTGACTGAAGCAGGAGGGGAGTGAGGCCAGATGGGGGTTGGGGGAGCCCTTGGCTCTGGACTTAGGGAGGCGAGATTGAGCCTTTTGTGAGGTTACAAATTAAAGCTCTGTCTGTGTCTCTAG
Seq C2 exon
GAAGCCTCTTGACTCCCAAAGGAGAGGACAGTGAGGAAGATGAAGATACCGAGTACTTTGATGCCATGGAAGACTCCACATCCTTCATCACCGTGATCACCGAGGCCAAGGAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184792-OSBP2:NM_030758:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.589 A=NA C2=0.723
Domain overlap (PFAM):
C1:
PF0247911=Herpes_IE68=WD(100=87.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCAGGGACTTCTTGGAAC
R:
CTGTCTTCCTTGGCCTCGGT
Band lengths:
310-914
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)