GgaINT0008010 @ galGal3
Intron Retention
Gene
ENSGALG00000007758 | F1NRB3_CHICK
Description
NA
Coordinates
chr15:11044539-11046776:-
Coord C1 exon
chr15:11046590-11046776
Coord A exon
chr15:11044657-11046589
Coord C2 exon
chr15:11044539-11044656
Length
1933 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
CAACCCCTTTGTGCCCCCAGGGA
3' ss Score
9.86
Exon sequences
Seq C1 exon
GCTTGCCGTGATTTCCTGGACTTAGCAGAAACTCACAGCCGAAAATGGCAGCGGGCGCTGCAGTATGAGCGGGAGCAGCGGATCCGGCTGGAGGAGACCATCGAGCAGCTAGCCAAGCAGCACAACAGCTTGGAGAGAGCCTGCCGCGGGGCACCGGGCAGCGCAGGCAGCGCCGGCACCACCAAGG
Seq A exon
GTGAGCCCAGGGGATGGGGATGGGAGGAGGCACAGGCAGTGCTCTCTGTGCCCATGCTGCTTGCTTTTAGAGAGTTTATGGTTATCCCAAATGGTCCTGCTGCTCCTTGCTTGGGGACTGGGACACCTGGGCCATGGCTTGCTTGTGCTGTTTCAAATCCTATCCCTGCTAACAGGGCACGTCTCAGGCTGTGGTGCTTGGAGGAAACCCAGGGTCCCCAAATGCTGCTGACTTCACAGCTGCAGTGTGGCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGGTCTCGAATGCTGCTGACTTCAAGCTGCAATTAAGAGGCTCACAATCCCAACTGGGACTCATTTGCCGCTTGCCCTTGTTATTTATCGGAAAGTAAAATCAAATGGCTTTGGATAGCAGTGCCAAATCTCCTTCCTTGCAGGAGGAACTCTTTACAGCCTGGTGGCCCAAAGCTGCATGTACAGCTGTGTCTTATTTTAAATGAATGTATGGACTTAAGTGAGAAGTGAGCTGCTGGAGGGCAGTGCCTGGTGTAGGGGCAGGCACAGCAGCAGCCCGAGCCCCTCACAGTGGGCAATCCTTGCTGCTTCAGAGGGACACAGGGACAAGGAGGTGGCTGTACCCTGCCTGCAGGTGACTCAGCAGCATGGGGTGCAGTGGGGATGGAGCTGGAACATACCTCCTGGTGCTGCACACAGCTCTGCAAGGCACACAGATGCTCACGCCGTTCCCATTGCTGAAGCAGTACCACCACCTACAGCTCAGTGATGGGGTGGGACATTGTCCACCTTGTAAGGTTGTGGTTTAATACGAATGGCTGCAGGAGGTGTGGGAATGGATACTTTAGGGGTGGTCAGCTCTTGCCATTCTGGTTGCTGGAATAGAGGCTGCATGGCAGAGCACTGAAGCTGGTGCCTGCAGTGAGGCTGTGCCCAGAGGGCAGTGCCACGTCTCAAAAGTCCCCTTCGTGTTTGGTGTCTGTGGTGTGCACATGGCTTAGGGCTTCTGGCTTCCTGGCAATGGGAGGGGACAGGGCAGGAGACAGTGGTGGCAGTGAGACTCAGTGGGTTTGAAAGGGGACTGGATTTAGTCTGTAAGCAAGAGGGCAGCTTAGGCAGCAGCTGAGCATCTCAACCCCTTTGTGCCCCCAG
Seq C2 exon
GGAGCGTGCAGTCTGCCAAAGGAGAGGCCAGTGATGAAGATGAAGAGACGGAGTATTTTGATGCCATGGAGGATGCACCAGCTTTTATCACTGTAACCGCAGACCCCAAGCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007758:ENSGALT00000012578:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=NA C2=0.775
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCCGTGATTTCCTGGACT
R:
CTGTGGTGCTTGGGGTCTG
Band lengths:
304-2237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]