GgaINT0008010 @ galGal4
Intron Retention
Gene
ENSGALG00000007758 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr15:10709023-10710407:-
Coord C1 exon
chr15:10710221-10710407
Coord A exon
chr15:10709141-10710220
Coord C2 exon
chr15:10709023-10709140
Length
1080 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
CAACCCCTTTGTGCCCCCAGGGA
3' ss Score
9.86
Exon sequences
Seq C1 exon
GCTTGCCGTGATTTCCTGGACTTAGCAGAAACTCACAGCCGAAAATGGCAGCGGGCGCTGCAGTATGAGCGGGAGCAGCGGATCCGGCTGGAGGAGACCATCGAGCAGCTAGCCAAGCAGCACAACAGCTTGGAGAGAGCCTGCCGCGGGGCACCGGGCAGCGCAGGCAGCGCCGGCACCACCAAGG
Seq A exon
GTGAGCCCAGGGGATGGGGATGGGAGGAGGCACAGGCAGTGCTCTCTGTGCCCATGCTGCTTGCTTTTAGAGAGTTTATGGTTATCCCAAATGGTCCTGCTGCTCCTTGCTTGGGGACTGGGACACCTGGGCCATGGCTTGCTTGTGCTGTTTCAAATCCTATCCCTGCTAACAGGGCACGTCTCAGGCTGTGGTGCTTGGAGGAAACCCAGGGTCCCCAAATGCTGCTGACTTCACAGCTGCAGTGTGGCTCACGTCCCAACTGGGACTCATTTGCCGCTTGCAGAAGTTATTTATCGGACAGTAAAATCAAATGGCTTTGGATAGCAGTGCCAAATCTCCTTCCTTGCAGGAGGAACTCGTTACAGCCTGGTGGCCCAAAGCTGCATGTACAGCTGTGTCTTATTTTAAATGAATGTATGGACTTAAGTGAGAAGTGAGCTGCTGGAGGGCAGTGCCTGGTGTAGGGGCAGGCACAGCAGCAGCCCGAGCCCCTCACAGTGGGCAATCCTTGCTGCTTCAGAGGGACACAGGGACAAGGAGGTGGCTGTACCCTGCCTGCAGGTGACTCAGCAGCATGGGGTGCAGTGGGGATGGAGCTGGAACATACCTCCTGGTGCTGCACACAGCTCTGCAAGGCACACAGATGCTCACGCCGTTCCCATTGCTGAAGCAGTACCACCACCTACAGCTCAGTGATGGGGTGGGACATTGTCCACCTTGTAAGGTTGTGGTTTAATACGAATGGCTGCAGGAGGTGTGGGAATGGATACTTTAGGGGTGGTCAGCTCTTGCCATTCTGGTTGCTGGAATAGAGGCTGCATGGCAGAGCACTGAAGCTGGTGCCTGCAGTGAGGCTGTGCCCAGAGGGCAGTGCCACGTCTCAAAAGTCCCCTCGTGTTTGGTGTCTGTGGTGTGCACATGGCTTAGGCTTCTGGCTTCCTGGCAATGGGAGGGGACAGGGCAGGAGACAGTGGTGGCAGTGAGACTCAGTGGGTTTGAAAGGGGACTGGATTTAGTCTGTAAGCAAGAGGGCAGCTTAGGCAGCAGCTGAGCATCTCAACCCCTTTGTGCCCCCAG
Seq C2 exon
GGAGCGTGCAGTCTGCCAAAGGAGAGGCCAGTGATGAAGATGAAGAGACGGAGTATTTTGATGCCATGGAGGATGCACCAGCTTTTATCACTGTAACCGCAGACCCCAAGCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007758:ENSGALT00000012578:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=NA C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCCGTGATTTCCTGGACT
R:
CTGTGGTGCTTGGGGTCTG
Band lengths:
304-1384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]