HsaINT0118555 @ hg38
Intron Retention
Gene
ENSG00000184792 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr22:30887426-30888340:+
Coord C1 exon
chr22:30887426-30887618
Coord A exon
chr22:30887619-30888222
Coord C2 exon
chr22:30888223-30888340
Length
604 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
AGCTCTGTCTGTGTCTCTAGGAA
3' ss Score
10.78
Exon sequences
Seq C1 exon
GCCTGCAGGGACTTCTTGGAACTAGCAGAGATACACAGTCGGAAATGGCAGCGGGCACTGCAGTATGAGCAGGAGCAGCGCGTGCACTTGGAGGAAACCATTGAGCAGCTGGCGAAGCAGCACAACAGCCTCGAGCGGGCCTTCCACAGTGCCCCTGGCCGGCCGGCCAACCCCTCCAAGAGCTTCATTGAGG
Seq A exon
GTGAGTGGGCAGCCAGGGCAGGGCTGTCCCATGACCTTCTGCCAGCTGGCTCTGCATACACAACTTCTGCGCCCCCACATGCACATCCCTGGCTGTGCCCACATGTGGGCTGGCCTTGGCCAACTCTTGACTGCCTCTTCGTGGTTTTGTATCTCCCATGTCCATCACCCACTGGCAACAGTTTGTCTGCACCTAGGTTCACATTCTCAAGAGTTAAATTTAATGAGCCCAGCTGTCCCCTGTGTGACAGGGGTGTCCTGGTGCCAGGTGGCCACCCACCTAGCCTTGGGTTGGGGGTCATGGGGACCCTGGACAGGGGTCCATCAGAAAGGGAAGCTGGGCCACAGAAAGACTGACCCACATGTTGAGAGATCGGGGGGGCTTCCAGAAAGAGGCTCCTGTGCGGTGAATGCGTTGAAAGCACATGATTCTAGCAGAGGGAGCAAGGGTGGCCGCAGCCCAGGGAATCAGGGCTGCCCAGGTGACTGAAGCAGGAGGGGAGTGAGGCCAGATGGGGGTTGGGGGAGCCCTTGGCTCTGGACTTAGGGAGGCGAGATTGAGCCTTTTGTGAGGTTACAAATTAAAGCTCTGTCTGTGTCTCTAG
Seq C2 exon
GAAGCCTCTTGACTCCCAAAGGAGAGGACAGTGAGGAAGATGAAGATACCGAGTACTTTGATGCCATGGAAGACTCCACATCCTTCATCACCGTGATCACCGAGGCCAAGGAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184792:ENST00000332585:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.587 A=NA C2=0.708
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCAGGGACTTCTTGGAAC
R:
CTGTCTTCCTTGGCCTCGGT
Band lengths:
310-914
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development