BtaINT0111669 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024633 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr16:2025886-2030002:-
Coord C1 exon
chr16:2029037-2030002
Coord A exon
chr16:2025987-2029036
Coord C2 exon
chr16:2025886-2025986
Length
3050 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
CAGCTGCTCTTCTCTTAAAGGTG
3' ss Score
8.68
Exon sequences
Seq C1 exon
ACTTCCTCGTCTGCGCTGTCCCCCGTCCTCACCATGTCTTCGACTCAGGGCAGTGGGGAACACTGGAAGTCCCTGGAGTCGGTGGGCATCAGCCGCAAAGAACTGGCCATGGCTGAAGCCTTGCAGATGGAGTACGATGCGCTGTCCCGGCTTCGGCACGACAAGGAGGAAAGCAGGGCAAAGCAGAACGCAGACCCCTCTCTGATCGGCTGGGATGAGCCTGTTCTGGACTTCTACAGCAAGCCAGCGGGAAGGCGGAAGGACCTCAAGCTCTTACGCGGTCTTTCTGGCTCCGATCCTACCCTCAATTACAACTCAGTCTCCCCACAGGAAGGGCTGCCCAACCACTCTACCTCCCGGGGCTCCCAGCCTGGCCCAGATCCCTGGCCCAAAGGCTCCCTGGCCGAAGACTATCTCTACATTTTTGATGGTTCAGATGGGGGGCTCTCCTTGTCCCCAGGACCAAGGCACAGAGAAGACTCTTCTAAGAAACTGTCCCCGCCTCCTCTGCCTCCCCGAGTCTCTATCTGGGATACTCCTCCCCTGCCTCCCAGAAAGGGGTCCCCCTCCTCTTCCAAGGTTTCCCAGCCCAGTGACATCAACACTTTCTCTTCAGTTGAACAACCTCCAGGCAAGTTGCTGGGGCCCGGGATCCTAGAAGAGGAGGAGGAGCTGGGAGGTGGGAGTCCGGGGCGGCCGCTGGGTTCCGTGGACTACGACGGCATTAACGATGCCATCACACGGCTGAACCTGAAGTCGACCTACGACGCAGAGATGCTGCGGGATGCCACCAGGGGCTGGAAGGAGGGTCGGGGGCCCCTGGACTTTGCCAAGGACACTCCTGGGAAGCCCGTGGCCCGGAGCAAGACCATGCCCCCACAGGTGCCCCCCCGCACATACGCCTCCCGCTGTGCCAACCGGAAAAACGCAACACCCGGCAAGAACCGCCGCATTTCTGCAGCCCCG
Seq A exon
GTGAGGACCTCTGTGTTTCTTCTGTGCCTGTTCCCTTGTCCTTCAGAAACAGAACAGTCCCTCTTTCCTCTTCACTGTCCAAATGCAGGTCTGCTCCACCCTCACCCCTTCAGTACACTCCTGCCTCTGCCTCTGCCACTGTGCCCCAGGCCGGGCTGGGGAAGGGAGGAGGGACGCCAGGAGAGGGAGCTCCTTTTCAGGGCCAAGTTTCGTGTGTCCCGGCCAAGCGGCCCTTGTGGGTGTGGGCGTTTCTGAATGCCCGCTTAGTGATATAAGGGGAGACCTGGGGTGAGGAGATGCAGCGTTGACTCCATGGCCGAATGGCCTCTGCTTTCTGACTTTCTGCTCGGCCGAAAGTGCTGTGTGACGATGGGGTTGAGTCCCGAGCCTGACCAATGTTCGGCGCTCAGGGAGCGCGTCCTGGCCAGACCTCTCAGTGTCTTGCGTGATGAGCCTTGGTGCAGAGCCCTGCTGCCTCTCACCCCAAAGCTCCACTGTGCTCGCTCCCTTTCTCTCTGTGCTCTCTCCCCCACTTCTCTCCAGGTCTCTGCCTCTCTGCCCCGCTCTCTGTCTCCTCCCTGTCCTCTGTGCGCGCACACGCATGCCTCTCTCTCTCATTGGGATAAAATATACATCCCATAAATCTCTTTGAACCAGTCGTAAGTATGCAATTCAGTGGCATTAAGTACATTCATGTTGTTGTGCCATCATCACCATCATCCATCTCATTTTGCAGTGAAAATATTTAGAAAAAGTATGCAGTGTGACCATAATAGTTTCACTTTTATCAGTGCATAGTATACAATAGCAAAGCATTTACGCAGAAGCACAGGGTAGGTTTTTTTCTGGTTTAAGAAGTGTCAGCAGCATCCCCTTCAGGGCAGGACCTGAAGCCTGCTTCGTGTTTCACCCTCGGGCCCTGGAAACCCTGGCCCCGGAGGAGCCAAGAGGCACCCCTTGGCAGATGCCTTCTGTGCTAATGGCGTTCCACTTCATTCCATCCTTGTTTTCTCCTAGCCCATTGTCTAATGGACACTGGGGCTTTCCCACGTTACGTCCCAGTAATTGGGATCCTCCACGACTCTGGAAGAGCCACGTGGTCCTTCCTTCCTGTGCTGGTTAAGAGAGTCCCCCAGAGCAGAGGCAGCTCCTGGGATAAGCTGTAGGGAGCCAGGCTCTTTAAAGGCCCTGCTCTGAGAGGTGGGGCTGTTCCTGCTATTTATAGGGACAGGGAGAGTCTGTTCTCACACAGCCGGGCCTGCTCGCACCGAGTCAGGCCACCCTGGTAGGTGGGCACCCCTGTGGCTCCCTTTCCCCCTCCCCAACTCTCATCCTTCCCACATCCCCTGTGTGTTATCAGAATTCTGGGGGGAAACTTGGTCCAGTGTCTCCTTGAAGAAGCTAGGGCAAGCAGAGCTCCTGCCCGTTCTTAGGGGGACATGCGGCCTTGGTCCTCCCCACCCCAGCCTGGTGCGGGGGCTCACTCCAGGACCGGGGCCCCTTCCGGCTCCCGGCCCACACCACCTCCTCGCCTTCGCCGGGCCTCCAGCCGGAGCGACCCTCCTCATCCCAGGCCTGCGGGGCCAGCTGAGGAGACGGCTGGCTCCAAGTGCCGGCGCGGTATCCCTGCTGCCAGCCTCTGCCTTGCAGGTGCCCCCGGCCAGCATCAGGCGATGCCCCCAGGGCCTGCCGGCCGGGCAAACGTAAGTGGCTTTGTTTTGTTTTCTTACGGAGCCCATGAGTGGCACTGAAAGGGCCTGAGTGGCCCTCACTGGCCACTCTGTCTTCTGCCCCCTGCCTTGCCCTCCCCTCCCTGTCTCTGTCGCTCTGTTGCTCTCACTTCTGTGGGTGAGCTGCTGACAGTGGTACTATTGTTTTGACTGGGACACAGCACGAACTTGGCAGGGCCGGGACCTCCCATGCCAGCTGCCCCCACGCTGCCCTCCCCTCTCTGCACACCCTCCACGCCTGCCCAGGGGGCGAGGCCAGTGAGCGAGGGTCACTCAGAGGAAGCGATCTGGTTATTCAAACAAGGAACTCACTTGCTGCTGTCTGCCCCGGGGCGGGGCAGGCAGGCTGAGAGGTGAAGGCTGGTGTGAGCAGACTGGTGCGCAGCTTCTCGGAAATGGCGCTTTTACCCGATGCCGGCTGGTGCTCCATCTGAGCCATCACTTCGTTCCTTGGGGGCAGCCTCCCCCGGGGCTCTGGGCAGGTCTGTCAGGACAGACTTGCACCAGCCCCTCCTCCACTTCGTCCCCCTGGGGCTGTGCTACAGGTCTTGTTGGAGGGCTGCTTTAAAACTCTCCGTGGATGACTGGACAGCCCCGTGGTGGAGGTCCTGCTGAGAATCTCAGGTGGCACACAGTTTTCTTGGACTGGAAGTGGAGCTCAGGCAGGCTCCCTCACATTCCAGCTGTGGGGGACCAGCAGAGTAGAAGGACCTAACCCTTTTAGCAGGTCCTTTCCTGCCCAGGAAGCTGCTTTGACACTTTATTCCTCAAACAGCATTGACCGGGAAGGCACGTGTGTCTGAGTCATCGCCTCCATCTATGGTCTCTTAGTCTCTCTCTGTGTTGGGTCCCTGGGGCTTGCTGTGGATGTTGAAGTGTTGCCCAGGGCCCCGTTTCCTTGGGGACTCTTTGGGCAACCTGCTTCCATGGGCTTCCGTTCTGGGATAGGGGAAACAGCTGTCCGCTCAGCTTCCCGCCACGCCTCTGTGAGCACCCTCCAGAAAGTCAGCCCCGGGGTCCAGCAAGCAGGGCACTGCCTGACCTGCAGGCTTGAGCTTACTAGACACTGGCGTCTCCGGAAGGAGGTTTGGCCACATTCACGTCCATCTCATCCAGGCTTCCAAACTCAGCCAAGGCTTCAACTGCTTTTTCAACTTGGCGCTTAGTCTCCCAGGACAGAAGATAAATATATTCCTGAAAGTCCCACATATGCCACTCTCACCAGGAAGCCTTTACACCTGGAGGTTAAGAGTTTAGATTGAGGAGCGGCCTGTGGGAAGGGGATGATGAGGCTCTGAGTCAGCTGCTCTTCTCTTAAAG
Seq C2 exon
GTGGGCTCCCGGCCCCACACCGTCGCCAATGGCCACGAGCTGTTTGAGGTCTCAGAGGAGAGAGATGAGGAAGTTGCTGCATTTTGCCACATGCTGGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024633:ENSBTAT00000017388:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.804 A=NA C2=0.456
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development