RnoINT0111273 @ rn6
Intron Retention
Gene
ENSRNOG00000029938 | Pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:RGD Symbol;Acc:1306541]
Coordinates
chr13:49869145-49873294:+
Coord C1 exon
chr13:49869145-49870168
Coord A exon
chr13:49870169-49873193
Coord C2 exon
chr13:49873194-49873294
Length
3025 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
GAGTTGTTCTTCCTTTTAAGGTG
3' ss Score
9.87
Exon sequences
Seq C1 exon
GTCCCGAGACAACATGTACCTGCTGCCCTCCATGCCGGACGCTGGCAGGAAGTAGAAGGCTTCGTCGTCGTCTCCTGTGCCCCTCGCCCTCATCATGTCTTCGACTCAGGGCAATGGGGAGCACTGGAAATCCCTGGAGTCGGTGGGCATCAGCCGCAAAGAGCTGGCTATGGCTGAAGCCCTGCAGATGGAGTATGATGCTCTTTCCCGGCTCCGACATCACAAGGAGGAGAGCAGGGCCAAGCAAAACACAGAGCCCTCTCTTATCAGCTGGGATGAGCCAGCCTTGGACTTCTACAGCAAGCCAGCAGGCAGGCGGACAGAGCTCAAGCTCTTGCGTGGTCTTTCTGGCTCTGATCCCACCCTAAATTACAACTCCATTTCCCCACCAGAAGAGCTCCCCAACTCTACCTCCCAGGACCCACAGCCTGGCACAGATCCCTGGCCCAAGGGCTCCCAATCTGGAGACTATCTCTATATTTTTGATGGCTCAGATGGGAGATGCTCTCTGTCTCCAGTATCAGGTGACACCGATGGCTCTTGTAAGAAACTATCCCCACCTCCTCTCCCTCCTCGGGTCTCTATCTGGGATGCCCCTCCCTTGCCTCCTAGGAAGGGATCTCCCTCACCCTCCAAGATCTCTCAGCCTGATGACATCAACAGTTTCTCTTTGGTGGAACAGCCATCTGACAAACTGCTAGGGGCCCAGGACCCAGGAGAGGGAGAGCTACCCAATGGTGGGGGACAGCGACATGTGCTGGGGTCCGTGGACTATGACGGCATCAATGATGCAATCACGAGGCTCAACTTGAAGTCCACTTACGATTCGGAGATATTGTCTGACGCTACCAGGGGCTGGAAGGAGGGCCGAGGACCCCTGGACTTTAGCAAGGACACCTCTGGGAAACCTGTAGCCCGGAGCAAGACGATGCCCCCTCAAGTGCCCCCTCGAACCTATACGCCCCGATACGCCAACCGAAAAAACGCAACACCTGGCAAGAACCGCCGGATATCTGCCGCTCCG
Seq A exon
GTGAGGACCTTCCTTCCTGTGCGTTCCTTTCAGAACGTAAACTTGTTTCTCTTTGCAGTTCCAAATTCAGATCTACAAAGAACTCACTCCGCCTTTAGTCCTCCCTTTTGCCCTCAGGGCACTTGCAGGTTGGGGAGGGATCCAAGCTAGGCTTTATTATGGGAGGCAGGGCCAGGAACATCAGGAAAGTCTGGCTCCTGTTCTAGGCTAAGTTTCAGTGTGATGATCAGAAGAGCCCTTCTGAGGCAGGTGTTTTGAAGTTCTGGCTGCTGATTGTTACTTCTTTCATGATGTAAGGACCGAGTTAGGAGTCATCAAGCTCACACTGGTTGAGTGGTGGGGTGGGACTTGAGCCGCTTCTGTCTCCTGAGGCTCTACCCTGCCGATCACTCAAAGCGTTGACTACTTGTTTAGTGGTAGGTCACCCCCCCACCCCCGTCCAGATCTCCACAACAGCCCATCTGATGCTCCAAAGCCACGCGGCATGAGATGGCAGAGCTGGTATTAGACCCTGGTCTAATTCCAAAGTCTCTCCCTTCCTCACTGCTTTTATCGTGATAAAAAATATATCTTACACATTTGCCACTGGCCATTTAAAAGCATACAGTTTAATGGCAGTTAAGTGCAGTCATACTGTAGGGGGCGTTTACCTTTACCTATCTTTCCCCACTCTTTCCTCAGTGAAAATAGTCAGAAAAAGCCTGGCGGTATGATAATGCTTTGCCTTATTTATCATATACAACATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATGTAAAGAACAAAGTCTCTTCATGTCATCCCAGATGGCTAACACAGATGTGTTCATATGCCTTTGGCCCATAAGTGTCTCTGGAGGAGGGGACCTGAAGGCCACCTTATTTACCCTTGACTTCTGGACACCCTGCTCCCAGAAGTCAAGTGGCTGCCCCATAGCTTCGGACTTGTGTAGCAACTTATGGCCCGCCCCTCTTTGCAGCCCTTTCCTCCTTACCCTTTGTCTCAGAGCCCTGGGGCTTTCCCGCCTCCTGTCCAGCCTTAGGGACCAGTTCCAGCCCTGCACAGCTGCACAGTCCTTCCTTCCTCTGCTTTTGTAGACAGTCCCTCAGAGCCTAAACAGGGTGAGCTGCAACTTGGGAGCTCAGGCTTTTTAAAGGCTCAACTCAGAGGTGGGGCTGCTCCTGCTATTTATAGGAATGGGGAAAGTTCATCACACAGAGCTGGGCCTGCTCACAGAGTCAGGCAGCCTGGGGTAGGTGGTAGTCAGTCACCTTTGTCTCCCCTCCCCCATCTCATGTGTCATCAGAGTACCGAGAGGGAGCCTGACCTGGCCCGGAGCCTCCTTGAAGCAGGGAGGGCAAAGCAAAAAGCTCTTGCCAGTTCTGGGGTGGGGGAAAGAAACGATGCGGCAGTGGTCCCCGCCACCTCAGCTTGGGGCAGGGGCACGGCCTGCTGGGAGGGGAGACCCCTTGAGCTCCGCACCTATACCCCCACCCCGCCTTCGCCGGGCTTCCAGCCGGAATGATCCTACTTATCCCAGGCCCAGTGAGCCATCTCTGGAAAGGGCTAGGTCCAAATGCCAGCCTGGTACCCCCGCTGCCAGCCTCTGCTTGGCAGACTCCCCCGACCAGCATCGGACGATGCCACCAGGGCCTGCCAGCCGGGCAAACGTAAGTGGCTTTTGTTTTCTTACGGTGCCAGGGAATGGTACAGAAAGGGTATGAAATGGCCTTCAGTGGCCATTCTGTTTGTCCCTCTCCCTCCCTGCCTCTCTTGCCTCTGCTTTCTCTCTCTGACTCTTTCTCATAGGTTAATTGCTGACAGTGGTACTATTGTTTGGACTGGAACACAGGCATACTCTTGGCAAAGCCAGGGCCTCACATGCCAACTGTCCCCCTACTGCCAACCGCCCCCACTGCTGCCTTATCCTTCATGTACTGCCACCCCCACCCTACACATATCCAGGGGAGCAAGAGTGACCAGAGGGAGGGACATTTGCAGTCAGAACATTCAGGGAAGAGCTTGGTTGCTGCCTTGTGCCCTGAGAGGCCGGGAGGGCATAAGAACAGATGAAGGGATGATGGGAGGTGAGGTGGCACCCGGACCACAGCATCAGACAGCCCTCTTCCTCCCTGGAGCAGCTGTTAGAACCTGCCGCCTTTACCAGATGCAGCCTGGCAGTCCATGGAGCTGAAGCCTCATTCCCTGTGGCTGCCCTGGGTAGGCCTTTGAGGCCTGTCAATACTGGCTTTCTTCCTTGGGCCTCATTGACAGTTTCCTGGGGGTTTTAGAATAGCCCTGGGATGGGAGATGATTTGGGGCCTTTTCTAAGGATCTCAGTACTACATGTGTGTTCTGGGAGAGGAAACGAGGCTGATTGGGGCAGGATGCCTGTAGCCGTAGCCACTTAGAACCAGCAAGCTACTGAGGAGCCTAAAGAAGGAACTGGGCTAGGCTCTTCCCAGCCCAGAGCTCTGCTCTGACACAATTGGTCTTTCTCCTGAGAAGGCACGGGTGTCCATGTCATACCACTACCGACGAGCTCAGTCCTAGAGTCTGGTTTCCGGGGCTTTGGATGTCCAAGGGCAGCCTCCCCGGGGACCATTTGGGCTGTCCACCTGTCTCACCTAGCTCAGCTCACCTGGATGTCTCTGGAAGCCTTCCCAAGAATGCTTTGCCCATGGTGACTCTCAGCACTGTTACATACTACCTGATTATGGCCACACTGGGCTGGTCAGACATGTCCCCCTCAAAAGGCAGGTTTGGCCACTCTTGTCCACTGCCCCAGCTTCTTCTGTCTCAGCACATGCTTCAAATCCTTTTTCAGTTCAGCCTTTGCTGTCCTAGGTTGGCAGATTAAAAAAAATGTATTTCTGGATTTCATGTGGAGTGTGTGTGTGTGTGTGTTCTTTAGTGTTATGCTGAAAGTCCATCTGGGAGACCCTTCAGAGAAGGGATTCCACAGGGGGAAAAACGCTGAGTGAGTTGTTCTTCCTTTTAAG
Seq C2 exon
GTGAGCTCTCGGACCCACACTGTCACCAATGGCCATGAATTGTTTGAGGTCTCAGAGGAGAGAGATGAGGAAGTTGCTGCGTTCTGCCACATGCTAGATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029938:ENSRNOT00000042125:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.813 A=NA C2=0.399
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]