DreINT0114226 @ danRer10
Intron Retention
Gene
ENSDARG00000086927 | pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:ZFIN;Acc:ZDB-GENE-050309-145]
Coordinates
chr11:23442961-23447435:-
Coord C1 exon
chr11:23446590-23447435
Coord A exon
chr11:23443062-23446589
Coord C2 exon
chr11:23442961-23443061
Length
3528 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
3' ss Seq
ATATATGTAAATCCTCATAGGTG
3' ss Score
6.04
Exon sequences
Seq C1 exon
AGCCTGATGAAGAGGTTGTGCAACTCGTAGTGCCTTCAAGCTCCTTCCTGTGTTCCTCCTGTGCGCTGCTACAGGAACATGTCGGCAGCGCAGACTCAGAATGACCGGGAGCAGCGCTGGGGCTGTCTGGAATCGCTCGGCCTCAGCCAAAAGGAGCTGGTCCTTGCAGAGGCCTTGCAAATGGAGTATGACGCCCTTGCCCGTCATCGACAGGACAAGGGCACATCAAGTACGCTTCCTCCGGACAGCAGCAAATCATCGCCCTCACGGAGCGAGTCGTCTCTGCCTCGACGTGTTCCCAGTCCCTCTTGGAATAATTTACAGCAGCAGGGCGTTTCCGGATCTGACCCCATGCTGAACCACGTTCAACCCGGGGTGTCGAACCTATCCCGATCCAGCGGCGAATCCCATGGATTCACAAAGGAGCCGAGGTATATCCTGGACGAATGGGAAAGCGATTTCAAAGGAACATCGCAAATGTTGTCGAAAGGTCTTCCAACTCTGGATGAGCCTCCCCCACCGGTACCGCCCAGAAATCCAATCCCCCAAAATGATCCATTCATTGTCCATAGAAGTTCAGCACCACGGGATGTCAACTTATTCACTCCTGAGGTAGACCAACCCAAGCTTTCCTTCGGAGAGACGCTGAACTATGATAACCTCAATGACTCCTTGAGTAAGATAAACGGGGATTGGCTGTCGCCTGGTAGAAGTCGGAGAGCAAATGGAGACAAATCAGGGAAGGCAGTCGCTCGCAGTAATACACTTCCTCCTCAGATTCCTCCTCGCACATATCTTCCCACACCGAAGAGCACTAGAAGCCAGCGCAGAGTATCTGTAGATCCG
Seq A exon
GTAAGAGATGATATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTGTGTTATAGGGATGCACCGATATGGATTTTTTGGCCGATACCGATAACCGATAATTCTTCAGACTTGGAGACCGATAGCCGATATGTATAGTCCGATGTTTATAAATATTTCAAAATGATATATTTTTATACTGCAAACTTCATAAATGATTGAACTGCTCTTATGAACTAAATAGTCTATACTCAAAGCAAAAAAGCTTTAACTTCAAAATTGCAAGGTGATCATAGACCTATATTCACGATTTCACATAAATCTGCATGCAGAAAATTATTTCCTTTTCTTCATAGCAAATTAACATGCAAGTTGATTCTTGCATAAAATAATAGTTTAAATAAAATAATGGTATTTAATTAACAAGCAAGTTAAAAATATTTAAATAAGATGAATATGAAAGGGCTAAGGACTAAAACCAGCTCAAATGGTCATGAATAAAACATGTTACAGTGATGTACACATGTACAAATATGTCATGTCCTAAAAAGCCTTTTTTGGAGGTGTTTTGACAGTTCAGAGCCACCGTACAAGCGAACAGCTAAATATATATAGTACGTTTAGAAAATGCGGCACAGATTCATCCTATTTGGCGTTTTGACATGTCATGTAGGAGCTGCTTGTCAATCAGACGCTTCTGCGCTCGTTCTTGTTGTCAATTGCGGGGAAAATGATCGATGAAAAGTTTATGATAAACAGCTGAGAGTTTTACTCAACTGTAGAGGCAGAGTTGCCATCAGAGTCAGATTTTCATACAAAACCTGCATTGAGAAGACTTAATGGCAAACACAGAGCTGAATATAAAGACAGAATGAGCGGCTGGTCCAGAGCCTCTATGACTGGATTCACCTCTCACCTCTCCCCCGTGCTACAGTGTGTGTGTGTACAGTGTGTGTGTGTACAGTGTGTGTGTGTACAGTGTGTGTGTGTGCGCGCGGTGACCGCTCGCATGCTCGTTAAAATCAATATGAATATTCCGATCAAACTGAAAACATCTTACATCAACAACAACACATGACCAGCAACGCTTTGATAATAACAAATAGTCAGATTACAAACAACCGTTATGTTTACACATGTTGTAAAATGTGCGGGTCCAGCTGCAGTTTGGGGTGTGTGTGTGAAGCGAAGAGGGAGAGGGAGAGAGAGAGGAGCGGTTTTTGGGCAATGAGACTAGGAGACTGATTTGTTGTACCACACGGAAAGTAATAAATATTTTGGACCAAGTTACATGTATCCTCGTTCATTCACTGGCTGCAACTAAAAGAAAAGGCAATTCACCACGAAACTAACATTATTCGGCCCTGGAGTAATAAGTTAAGATCCCCTGCTATCTCTACACAACAAAGAGACGGAGCAGGAAAAGTTTACACATGTAATATTTTTCCTGAGGCGATTTAAAGCAAAATGCACATTGACACTCAATCAAACACATCTACAATGATAAGGAACATGGTTACTTACTGACTTATTAACGCACAGCAATACCACATGAAGAAATGACAGAATTTCAAGGAATAAACAATGTGGGAGAGATCCATTATAGTGCACTGGGCAAGTCTGAACAAGTTCCACCCACGCGTGCACGGCACGCAGGTCTGTACAATTACGTAATTTATCGGCTTAAAGATATCGGCCAAATTTAGACATCCGATCGATAACGATAATCTTAAAAATAGCATTTATCGGCCGATAACGATATGGCCGCCGATATATCGTGCATCCCTATTATGTTATGTTATGTTATAACAAAAACCTGCCATGAGAAACATCTTAGTTTGGCTTGAACATGAGCAGAGGTGAGGGGCTGTAGCAGTGAAAAGTGAAAGTATTCACCCCCATTACTTCAGCAACGGACCTAGTTGAAACCACAGGCAGTCAAGCAGCATAATACAGAGAGTGAATCATTACTGACGTAATGGGGGTGAGTACTTTCACGTTTCACTGCAACAGCCCTTCACCTCTGGTTATGTTTAAACCATTTTTAAACTAAGATCAGGTCTGCGCAGTGTTTCTCATGGCAGGTTTTTATCCTTCATACATGTTGAGAGATCTACTTGATCGACTTGATAAGGGAATATTCCTTGACATAACCCACACAGAAGTGACTTAGTGAAGCGTGTAGTCATGTATGATTTTAATCGTTGTATTAGTCTGAATGTAAATGCCCTCGTCAGGCAGTGCTGGAGCAGCGGGAGAGAGTGGACCACAGTGCATCAAACGAACAGTATTTACAAAAGAAAAATACACAACTGAAGACACTTAAAGGCTTTTATTTGCAGCAGCTCTGTGCTGCTCGTCCACAACAACTATTAACCCAATGCATTGGGTTAAATTAGGCTGTCAAGTATCTGTGTTCAGTTCGTTAAAACCAGTCCGGCAGTGTAATACAGAGAGTGAATCAAAGCGCATCAAATGATCAATAATTAAAAGGGGGGGAAAAAAAATAGAATAAATAACTATACTTTTTTATATTAGACACACATCTCATGCTTGTATTTGCAGCAGCTCCACGTCCACAACTTCACACATTGGGTTAAAGTGGGCTTTACGGTCACCTTTACTTCCGTTGTTTCTGTTCAGCGCAGGGAACTCAACCAACCCCGTGACGTCAGACACAGCGACATTCCAAGATGGCTGCGACCTAGGTCTAAAATCTATAGTAAAACATGTCGTTTTCTGCTGAATGCTTACATTAGTCGAGTTTGTTTAATATATTTTCATAAAAGTGGAATCCAATGTACAAAATAAGGTGAACTTGACTAAGTACTTAATTTCCCCTTTAACGTAGCATATACAACCATTACAACAAGCAGAGCTTTACTGCCATTTCACTGAATGACAAGAGCCCAATATCATAGACAACAGGCTTTAAATTTGTTGAAACAAAATACTAAACCAAATTTAACTTGACATTTAAGGGTTAAGACAAATGTTGAAATTCATGCACTGTTGTATGCCCATGTGCATATTCAAGCATCTATTTCTTGTCTTTTTATGCTTGAATGGACACGGATTCAAAGATCTTCAAACTTTTTATGTTAGCGAGCATCATAAACAGTCACAACGTCTGTAGTGACATTATATGGGATCTATGTATTCGGTCTTAAAGAGACAGCAACCTTACCTGTTATGTTATTTATGTCAATCTACCAATGAAAGGGAATATTAGAGATCACATGCGTCATATATTATGCATTGTTATCACATTAGGTTTGATATTTCAATTTCTGTACCTCAATTCTGTTAAACTCACTGGTAAATCATCTCAGTTATATCAATGCTTGTATGAATACTTAACTATATCATTTTATTAGTACTCTCAGTTCGTTTTAAGCTGTTTTGTTTTATTTAAAGTCATCATGAGTGTGTTTATTTATTAATTTTATATATATGTAAATCCTCATAG
Seq C2 exon
GTGTCTCTGGGGTCCAGGCCAAATGGCTTTGGTTATGAGCTCTTTCAGGTGTCTGAAGAAAGAGATGAAGAAGTTGCGGCCTTCTGTCATGTACTTGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086927:ENSDART00000124810:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.836 A=NA C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]