MmuINT0119713 @ mm9
Intron Retention
Gene
ENSMUSG00000026447 | Pik3c2b
Description
phosphoinositide-3-kinase, class 2, beta polypeptide [Source:MGI Symbol;Acc:MGI:2685045]
Coordinates
chr1:134962789-134966995:+
Coord C1 exon
chr1:134962789-134963806
Coord A exon
chr1:134963807-134966894
Coord C2 exon
chr1:134966895-134966995
Length
3088 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
CAGCTGTTTTTCCTTTTAAGGTG
3' ss Score
10.28
Exon sequences
Seq C1 exon
GTCCCAAGACAGCATGTACCTGCCCTCCAGGCCTGACACTGGCAGGAAGTAGAAGGCTCTGTCATCTCCTGTGCCCCCCGCCCTCATCATGTCTTCCACTCAGGGCAATGGGGAGCACTGGAAGTCCCTGGAGTCGGTGGGCATCAGCCGCAAAGAGCTGGCTATGGCCGAAGCCCTGCAGATGGAGTATGACGCTCTTTCCCGGCTCCGACATCACAAGGAGGAGAGCAGGGCCAAGCAGAACACAGAACCCTCTCTTATCAGCTGGGATGAGCCAGCCTTGGACTTCTACAGCAAGCCAGCAGGCAGGCGGACCGACCTCAAGCTCTTGCGTGGTCTTTCTGGCTCTGATCCCACCCTAAATTACAACTCCATCTCCCCACCAGAGGGGCTCCCCAACTCTACCTCCCAGGATCCACAGCCTGGCCCAGACCCCTGGCCCAAGGGCTCCCTGTCTGGAGACTATCTCTATATTTTTGATGGCTCAGAGGGGAGATGCTCTTTGTCTCCAGGATCAGGTGACACAGATGGCTCTTGCAAGAAACTATCCCCACCTCCTCTCCCTCCTCGTGTCTCTATCTGGGATGCCCCTCCCTTGCCTCCTAGAAAAGGATCACCCTCACCCTCCAAGATCTCTCAGCCTAATGACATCAACAGTTTCTCTTCGGCAGAACAGCCACCTGACAAACTGCTAGTGGCCCAGGACCCAGAAGAGGGAGAGCTGCCTGATGGCAGGGGACAGGGACACACGCTGGGGTCTGTGGACTACGATGGCATCAATGATGCAATTACCAGGCTCAACTTGAAGTCCACCTACGACTCAGAGATATCGTCTGATGCTACCAGGGGCTGGAAGGAGGGCCGAGGGCCCCTGGACTTCAACAAGGACACCTCTGGGAAACCTGTGGCCCGGAGCAAGACGATGCCCCCTCAGGTGCCCCCTCGAACCTATACTTCTCGATATGCCAACCGAAAAAATGCAACACCTGGCAATAACCGACGGATTTCTGCTGCTCCG
Seq A exon
GTGAGGACCTTCCTGTGCATTCGTTCAGAACGTAAACTAGTTTCTCTTTGCCATTGCAAATTCAGATCTACAAAATCTCACTTGCCCTTTAGTCGTCCCTTCTGCCCTCGGGGCTCTTGGGCACTTGTTGTGAGGGTTGGGGAGGGATCCAAGCTAGGCTTTATTATGGAAGGCAGGGCCAGGAACATCTGGAATGGTCTGGCTCCTTTTCTAGGCTTACGTTTCAGCACGATGGCTACAAGAGCCTTTCTGGGGGCAGGAGTTTTGAAGTACTGGCTGCCAATAGGTACTTCTTTCTTGAAGTAAGGACAGAGTTAGGAGTCACCAAGCTCACTCTGGCTGTCTCCTGACGCTCTGCCCTGCTGACCACTGCTCGGCCCTGATGACCACTCATAGCACTCATAGCATTAGCTACTTGTTTAGTGGTCTGTGACCCCATCCAGATCTCCACAACACCCTGTCTGATGCCCCAAAGCCACACAGCATGAGATGGCAGAGTTGGTATTAGACGCTGGTCTCATTCCAAAGTCTCTCCCTTCCTCCCTCTTCCTCTCAACCTCCCTTCCTCACTGCTTTTTATTGTGATAAAAATATATGTGACACGTTTGAGATTGGCCATTAAAAAGTATATAGTTCAAGGGCAGTAAGTGCGGTCATGCTGTGGGGGTGTTTACTTTTATCTGTCTTTCCTCACTCTTTCCTCAGTGAAGATATTTAGAAAAAGCCTGACAGTATAATAATTATATATATATATAATATATACATATCATATATGTGTGTGTGTGTATAAAACATATTATATATAAAGTACAGAGTCTCTTCATGTCATCCCAGATGGCTACCACACATATGTGTGTTGATATGTCTTTGGCCCATGAAGTGTCAGGAGTATCTCCAGCAGGGACCTGAAGGCCACTTTATTTTACCCTTGACTTCTGGACACCCTGCTCCCAGAAGCCAGGTGTCCGCTCCATAGCTTCAGACTTGTGTAGCAGTTTACAGCCCACCCCTCTTTCCAGCCCTCTTTCCTCCTTACCCTTTGTCTTAGTGCCTTGGGGCTTTCCCGCCCCATGTCCAGCCTTAGGGATCAATTCCAACTCTACACAGCTGCACGGTCCTTCCTTCCTCTGCTTTTGCAGAGACAGTCCCTCAAAGCCTAATCAGGGTGAGCTGCAACTCCAGAGCTCAGGCTTTTTAAAGGCTCAACTCAGAGGTGGGGCTGCTCCTGCTATTTATAGGGCTGGGAGAGTTCATCACACAGAGCTGGGACTGCTCACAGAGTCGGGCAGCCTGGGGTAGGTGGTAGTCACCTTTGTCTTCCCTCCCCCATCTCATGTGTCATCAGAGTACTGAGAGGGAGCCTGAACTGGCCTGGAGTCTCCTTGAAACAGCAAGGGCAAAGCAAAAAGCTCTTGCCAGTCTCGGGTGGGGGACGCAATGCGGCAGTGGTCCCCCCCACCTCAGCTCGGGGCAGGGGCACAGCCTGCTGGGAGGGGAGACCCCTTGATCTCCGCTCCTATACCCCCACCCCGCCTTCGCCGGGCTTCCGGCTGGAAGGATCCTACTTATCCCAGGCCCACTGAGCCATCTCTGGAAAGGGCTAGCTCCAAATGCCAGCCTGGTACCCCCGCTGCCAGCCTCTGCCTGGCAGACTCCCCCGACCAGCATCGGACGATGCCACCAGGGCCTGCCAGCCGGGCAAACGTAAGTGGCTTTTGTTTTCTTACGGTGCCAGGGAATGGTACAGAAAGGATATGAAATGGCCTTCAGTGGCCATTCTGTTTGTCCCTCTCCCTCCCTGCCTCTCTTGCCCCTTCTTTCTCTCCCTGACTCTTTCTCATAGGTTAATTGCTGACAGTGGTACTATTGTTTGGTCTGGAACACAGGCATACGCTTGGCAAAGCCAGGGCCTCACATGCCAACTGCCCCCACTGCCAACTTGCCCCCACTGCTGCCTTCTTCTTCTTCATGTACTGCCACCCCCACCCCACACACACCCAGGGGAGCAAGAGTGACCAGAGGGAGGGACACTTGCAGTCAGAATGTTCAGTGAAGAGCTTACTGCCTTCTGCCCTAGAGGGGCAGGGAGGGCATAGGAACAGCTGAAGGGGTGATGGGAGGTGAGGTGGCACACACTAACCACAGCACCAGACACCCCCGTTTCTCTCCAGAGCAGCTGTTAGAACCTGCCGCCTTTACCAGATGCAGCCTGGGACTCCATGGAGCCAGAGTCTCATTCCTGGGCTGCTGCCCTGGGCAGGCCTGTGAGGCCTATCAGTACTAGCTTCTTGTTTGTTCTTCCTTAGGGATCCTTTGACAGTTTCCTGGGTATTTTAGAGCCGCCCCGGGATGGGAGATAGTTTGGGGCCTTGTCTAAGGATCCCAGTACTACATGCGTGTTCTGGGAGAGGAAATGAGGCTGATTCGGGCAGGCTGCCTGTAGCCATAGCCACTTAGAACCAGCAAGCCTCTAAGGAGCCTAACAAAGGAGCCCAGCCAGGTTCTTCCCAGCCCAGAGCCCTGCTTTGACACGTTGGTCTTCCTCCTGAGAAGGCACAGGTGTCCGAGTCATACCTCTAGCGACGAGCTCAGAGTTAGAGTCTGGTTTCCAGGGCTTTGGATGTCCAAGGCCAGGCCTCCCTGGGGACCATTTGGGCTAACCACCTGCCTAACCTAGCTCAGCTCACCCCAGTGTCTCTGGGAGCCGTCCCACGACATGCTTTGCCTATGGTGACTCTCAGCACTGTGTTACATTCTGCCTGATTATGGCCACACTGGGCTGGTCAGACATGTCCTCCTCACAGAGCAGGTTTGGCCACTCTTGTCCACTGCCACAGCTTCTGTTCTTAGCCCAGGCTTCAAATCCTTTTTTAGTTTGTTCTTTGGTGTCCTAGGTTGGCAGGTAATGTATTTCTGGATTTCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCATTTTAATGTTACATTGAAAGCCCTTACACAACAGGCTGTGGTTTCACATCTTGGGAGGCCCTTCAGAGAAAGAATTCCAGAGAAGGGGAAAAGCTGAGTCAGCTGTTTTTCCTTTTAAG
Seq C2 exon
GTGGGCTCTCGGCCCCACACTGTTGCCAATGGCCACGAATTGTTTGAGGTCTCAGAGGAGAGAGATGAGGAAGTTGCTGCGTTCTGCCACATGCTGGATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026447-Pik3c2b:NM_001099276:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.842 A=NA C2=0.441
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: