GgaINT1021601 @ galGal4
Intron Retention
Gene
ENSGALG00000000623 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr26:1745736-1747306:-
Coord C1 exon
chr26:1746392-1747306
Coord A exon
chr26:1745837-1746391
Coord C2 exon
chr26:1745736-1745836
Length
555 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
3' ss Seq
GGCTCGTGCTCTACCCACAGGTC
3' ss Score
10.31
Exon sequences
Seq C1 exon
ATGTCCGCCACGCGCGGCAATGGAGAGCACTGGAAGTCCCTGGAGTCGGTGGGCATCAGCCGCAAGGAGCTGGCACTGGCCGAGGCCCTGCAGATGGAGTACGACGCTCTGTCGCGCCTGCGGCAGGACAAGGAGGAGAGCCGGGCCAAGCAGCGTGCCGAGCCGCCCCTCATCTCCTGGGATGAGCCCGAAAACACCCATGGGTGCACCGGGATCAAAGCGACGCGCGGCCTGTCCGGCTCCGACCCTGCGCTCTGCAATAACGCCCTGCCCGAGGGGCTGACGCCGGGCCTCCCCGTGCCCCCACCGCGGCCCAACGCTGCACCCGCCGGCACAGAGGGTCCAGCCTGGCTGAAGACCCCGCTGGCCGGGGACTACCTCTACATCTTCGACGGCTCCGAAGGGGACTTCCTCGGGGAGCCCCTCAATGGCACTTCAGCTCTCGACAGCGATGGGGGGTCCCCCAAAAAGCTCTCCCCGCCGCCACTGCCCCCCCGGCACTCCGTGCGGAGCCATCCCGAAGGCAGCCGGCGCCTGGGGAAGGGATCCCCGCCGTCCTCCAAAGGATCCCAGCCCAGGGACGTCAACGTGTTCTCAGCCCATGAGCAGCCCCGTGGCAAGCTGCTCGCCCGCCGCATCTCCGAGGAGGATCCCTACGGCCTGGCCGACTATGAGGGCATCAACGATGCCATCACCTGCCTCAACCTCAAGTCCACCTATGAGTCCCAGGTGCTGCGGGAAGCCGCCCGCGGCTGGAAGGAGGGCAGGAGCATCTTTGAGAAGGAGTCGAGCGGTAAACCGGTGGCACGGAGCAAAACTATGCCCCCCCAGGTCCCCCCACGGACCTACGTGTCCCGGTTCGGCAACAGGAAGAATGTGGCACCCAACAAGAACCGCAGGATCTCTGCCGACCCG
Seq A exon
GTAAGGGGCTGTTCTCTCCCCGCAGATGGCAGCGGGGTGGGGGATGGTTGTGTCCCTCCTCCCAGCCCTGCTGTGCCCCCCGGGAGCCTGGGGAGCGAATGCTGGGGGGCTGCAGTGGGCTCATGGCCCCAAGCTCAGCTCCCCCCAGGTCCCTGCTCTGTGGTGGGTGAGCGATGCAGCTGGTGGGGGCCGTGTAAGTCACCCTCAGCTTCCTCGCTGCCAGAAACCAATTATAAAAGGGCATTAAAATTGTCTTTAGTGGCTGCTGTGTTCTCTGCCTTTCTCTGCCTCCCGTTAGCTGCTGGCTGGGTTAATTGCTCTGACAGCGGGGCCATTGTTTGCTGCTGAAGAGCGATGGAGGCTTGGGGACCCCCAAGAGTGGGGGGAGCCTGGCTCTGCTGCAGCCCTCAGTGTCCCAGGGTTGGTCCCTTGGCATCCTGGAGCCCATCTGTGTGGCTGGGCAGGATGAGGCTCCCGAGCTATGCAGAAGCAAGGTGGGATGAGGGAGGCATGAAGCACCTGGGTGTTGCTGATGGGCTCGTGCTCTACCCACAG
Seq C2 exon
GTCCCCCCCAGGCCACGCTCCTTAGCCAATGGCTATGAGCTCTTTGAGGTGTCAGAGGAGAGGGACGAGGAGGTGGCTGCTTTCTGCCATATGCTGGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623:ENSGALT00000000884:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.754 A=NA C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGAGGAGGATCCCTACGG
R:
GTCCCTCTCCTCTGACACCTC
Band lengths:
342-897
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]