BtaINT0114794 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032137 | PNPLA6
Description
neuropathy target esterase [Source:RefSeq peptide;Acc:NP_001070015]
Coordinates
chr7:17640345-17640853:+
Coord C1 exon
chr7:17640345-17640408
Coord A exon
chr7:17640409-17640684
Coord C2 exon
chr7:17640685-17640853
Length
276 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CCTCCCCACTCCCACCCTAGCAT
3' ss Score
7.68
Exon sequences
Seq C1 exon
GCCCCACGCTCCTCCTCAACAGTGACATCATCCGGGCCCGCCTGGGGGCCTCTGCACTGGACAG
Seq A exon
GTGTGTGTGGGGTATGGGGACGGGGAGCACAGGGATGAGCTCAGAACGTAGGATTCCTTCAGTTTCATTTGAGTTCTAGGCTGTGAAACAAGGAGCGTGGGCCCCCATCCCTCTGGCCACTGGGGAGACAGTGGGGTGAATTGGTCCCTAGAGGATGCAGTCATGTCTAGGCCTTGAATGTCCACATCCACGTCCCCACAGCAGTGGAGCTACATGGTCTCTGAGGGCACAGACCCCTGACCAGCCCCAAGATGACCCTCCCCACTCCCACCCTAG
Seq C2 exon
CATCCAAGAATTCCGGCTGTCAGGGTGGCTGGCCCAGCAGGAGGACACGCACCGCATCGTGCTCTACCAAACAGACACATCGCTGACGCCCTGGACTGTGCGATGCCTGCGTCAGGCCGACTGCATCCTCATCGTGGGGCTGGGCGACCAGGAGCCCACACTTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032137:ENSBTAT00000007351:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(1.1=4.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCACGCTCCTCCTCAA
R:
CCAAGTGTGGGCTCCTGGTC
Band lengths:
228-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]