RnoINT0114507 @ rn6
Intron Retention
Gene
ENSRNOG00000000977 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:RGD Symbol;Acc:1564611]
Coordinates
chr12:2088376-2089132:+
Coord C1 exon
chr12:2088376-2088439
Coord A exon
chr12:2088440-2088963
Coord C2 exon
chr12:2088964-2089132
Length
524 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGT
5' ss Score
7.76
3' ss Seq
ACTCCCTCATTATACCCCAGCAT
3' ss Score
4.6
Exon sequences
Seq C1 exon
GTCCCACGCTCCTCCTTAACAGTGACATCATCCGGGCACGCCTGGGGGCTTCAGCGCTGGATAG
Seq A exon
GTATGTGGGGTTTTGGGGAGCGGGGCTGGAAGGGTGGAAGGCCTAATATTGGGGATTCTCTAAGTTTGGCTTCTGAATCGAGGATTCTTGTCTGTGGGATCAATAGGGAAGCGATGTGGGCAAACCCCTTTAGGTAGCAGAGGTGTCAAACTGGAAATCCAGGGGCCATATGCAGCTCTCATAACTATGACTGTGGCTCAAAGCATACTTAAAATATTATGAGGTTTGTTCTTTCTTTTGTTTGGTTTTATTTTCTTTGTAACTTGATTACATGATTCTTGAGCATTAACATTGTTCATGGTTTCACTTGGCAAAGTGATACAAAACAAATACATGTGAAAATAAATGTAGCCCCCATTTCAACACTCCCTGACCCCCAACTCCCTGCTTTGGCATGGATGTTAATTACTGGGACCTGGGAAGATCTAAATATTCCCAGCGGTAGGATTGCACTATCTCTGTGTTGGGAGAGGTTGTGGAACTCCAGACCAGCTCCAAGATGATACTCCCTCATTATACCCCAG
Seq C2 exon
CATTCAAGAATTCCGGCTGTCAGGGTGGCTGGCTCAGCAGGAAGATGCCCATCGAATTGTACTCTACCAAACTGACACGTCCCTGACGCCTTGGACCGTCCGTTGCCTCCGCCAGGCCGACTGCATCCTCATTGTGGGCCTGGGGGACCAGGAACCCACTGTCGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000977:ENSRNOT00000001298:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGCTCCTCCTTAACAGTG
R:
CTGACCGACAGTGGGTTCCT
Band lengths:
230-754
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]