DreINT0116737 @ danRer10
Intron Retention
Gene
ENSDARG00000010773 | pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:ZFIN;Acc:ZDB-GENE-050107-4]
Coordinates
chr1:45199390-45200189:-
Coord C1 exon
chr1:45200126-45200189
Coord A exon
chr1:45199559-45200125
Coord C2 exon
chr1:45199390-45199558
Length
567 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
AAATGCGTGTTTTTCTGTAGTAT
3' ss Score
6.21
Exon sequences
Seq C1 exon
GACCAACCCTGTTGCTAACCAGTGACATCATCAGAGAAAGACTAGGGGCTTCTGCTTTGGACAG
Seq A exon
GTAATTACACAGCATGGACCATGCCACACTTTGAACTAGACTTTTTTTGTAGGGATGAAAGGTATGGTAAGGGAACAGTGGGATGAAGGGGAAGGGAAGTAAGAGGATAAACAGTGAACAGGTGGGTCGGTTGATTGGGCGTTCTAAAATGATGCCTGAGACTCAGGGTGGGGGTACCGTCTCTGTAATATTTTGGTAGAGTGATTGGACCAATCACTAGGTTGAATTAAGGAGGTGTTCCTTGAATCAAGGAGGGAGTGATTGGACCAATCCCTAGGTTGAAGTAGGAGGTGATGGATTCAACCTAGGAGGGAAGATAAGGTTATAGGATTGTTAATGGGAAGCAAGGAAATAAAAGGAGGGAGGGTGGGATTGAAAGAACGTAAACAGTGCTAGAGGGCTGGTCTGCCTTAACTAAGTTTTTAGGTAGTAGGTGATGGGTAAGGACACAAAGTGAGGTGTGGTCCTGCTGCCAAACCATTGTTAACAAGTTAACTCCATATAAGAGATCTGATTCAGTACTTCATTGTATTTATCTTTCAATCTGAAATGCGTGTTTTTCTGTAG
Seq C2 exon
TATTCACGAGTACAGGTTATCAGGTTGGTTGGCTCAGCAGGAGGACATTAATCGTATAGTGCTGTATCAGACGGACAGTGGAATGACCCCATGGACTCAACGCTGCATCCGACAAGCGGACTGCATCCTCATTGTAGGGCTCGGTGACCAGGAACCTGCACTTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010773:ENSDART00000140890:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACCCTGTTGCTAACCAGT
R:
CTCTCCAAGTGCAGGTTCCTG
Band lengths:
231-798
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]