GgaINT0004584 @ galGal3
Intron Retention
Gene
ENSGALG00000007881 | PNPLA6
Description
NA
Coordinates
chrUn_random:60656444-60656745:+
Coord C1 exon
chrUn_random:60656444-60656507
Coord A exon
chrUn_random:60656508-60656576
Coord C2 exon
chrUn_random:60656577-60656745
Length
69 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TGTCTCCTCCATCCCATTAGCAT
3' ss Score
6.24
Exon sequences
Seq C1 exon
GTCCCACGCTGCTCCTCACCAGTGACATCATCCGCGCCCGACTTGGCTCCTCGGCACTGGACAG
Seq A exon
GTAACTCCCAGCAGAAGGGGCATCACCGGTGCCCCAGTGCCGTACCATCTGTCTCCTCCATCCCATTAG
Seq C2 exon
CATCCATGAGTACCGCCTGTCGGGCTGGCTGGCCCAGCAAGAAGACATCCATCGCATCGTGCTCTACCAAACCGACTGCACTCTGACGCCGTGGACCGTGCGCTGCATCCGGCAGGCGGACTGCATCCTCATCGTTGGGTTGGGTGACCAGGAGCCAGCGCTCGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007881:ENSGALT00000012800:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACATCATCCGCGCCC
R:
CCCAACGATGAGGATGCAGTC
Band lengths:
182-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]