BtaINT0116223 @ bosTau6
Intron Retention
Gene
ENSBTAG00000027789 | PPIG
Description
Bos taurus peptidylprolyl isomerase G (cyclophilin G) (PPIG), mRNA. [Source:RefSeq mRNA;Acc:NM_001109807]
Coordinates
chr2:26709542-26709804:-
Coord C1 exon
chr2:26709775-26709804
Coord A exon
chr2:26709682-26709774
Coord C2 exon
chr2:26709542-26709681
Length
93 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAG
5' ss Score
4.2
3' ss Seq
ATCTTTACTTGACTCTTTAGGCA
3' ss Score
7.78
Exon sequences
Seq C1 exon
AACAACAAAACCAACTCCTCATTTAGATGG
Seq A exon
GTAAAGATTATTTTCATGTATTTTACAACCTATTTTAAATTAATATATTAAAATAAGAAACTTTTATTTAATCATCTTTACTTGACTCTTTAG
Seq C2 exon
GCATCATGTGGTTTTTGGGCAAGTGATTTCTGGTCAAGAAGTTGTGAGAGAAATAGAAAACCAGAAAACAGATGCAGCTAGCAAACCATTTGCTGAGGTACGGATACTCAGTTGTGGAGAGCTAGTTCCAAAAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027789:ENSBTAT00000040072:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.604
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(6.0=100)
A:
NA
C2:
PF0016016=Pro_isomerase=PD(24.1=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAACAAAACCAACTCCTCATT
R:
TAGCTTTTGGAACTAGCTCTCCAC
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]