HsaINT0130263 @ hg38
Intron Retention
Gene
ENSG00000138398 | PPIG
Description
peptidylprolyl isomerase G [Source:HGNC Symbol;Acc:HGNC:14650]
Coordinates
chr2:169614464-169614724:+
Coord C1 exon
chr2:169614464-169614493
Coord A exon
chr2:169614494-169614584
Coord C2 exon
chr2:169614585-169614724
Length
91 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
3' ss Seq
TTTTTTACTTGACACTTTAGGCA
3' ss Score
6.25
Exon sequences
Seq C1 exon
AACAACGAAACCAACTCCTCATTTAGATGG
Seq A exon
GTAAATATTATTTTATTTATTTTACAACCTGTTTTAAATTAACCTTGAAATAAAAAGCTTTTATTTAATAATTTTTTACTTGACACTTTAG
Seq C2 exon
GCATCATGTTGTTTTTGGACAAGTAATCTCTGGTCAAGAAGTTGTAAGAGAGATTGAAAACCAGAAAACAGATGCAGCTAGCAAACCGTTTGCGGAGGTACGGATACTCAGTTGTGGAGAGCTGATTCCCAAATCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138398:ENST00000260970:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.495 A=NA C2=0.502
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(6.0=100),PF095075=CDC27=FE(4.7=100)
A:
NA
C2:
PF0016016=Pro_isomerase=PD(24.1=83.3),PF095075=CDC27=FE(22.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAACGAAACCAACTCCTCA
R:
TAGATTTGGGAATCAGCTCTCCAC
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development