DreINT0118162 @ danRer10
Intron Retention
Gene
ENSDARG00000044431 | ppig
Description
peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
Coordinates
chr6:3538005-3538264:+
Coord C1 exon
chr6:3538005-3538034
Coord A exon
chr6:3538035-3538124
Coord C2 exon
chr6:3538125-3538264
Length
90 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
TGTTATTTCTCCCTCTGCAGAAT
3' ss Score
11.52
Exon sequences
Seq C1 exon
AACTACTAAACCAACTCCTCACTTGGACGG
Seq A exon
GTAAGTGTGGATATAGATTAGTAATTGATCACTAAATAGTGTATTTGTATATGTGCTGTATATTTAGTTGTGTTATTTCTCCCTCTGCAG
Seq C2 exon
AATTCATGTGGTGTTTGGTCAGGTGATCACCGGCCAGGATGTGATCCGGATGATCGAGAGTCAGAAGACGGATACCAACAGCAGACCGTATGCAGAGGTCAAAGTGCTCAACTGTGGGGAACTTGTTCCAAAATCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044431:ENSDART00000065256:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=NA C2=0.708
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(6.0=100)
A:
NA
C2:
PF0016016=Pro_isomerase=PD(24.1=83.3),PF105004=SR-25=PU(27.2=64.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAACCAACTCCTCACTTGGACG
R:
ACAAGTTCCCCACAGTTGAGC
Band lengths:
151-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]