MmuINT0124743 @ mm10
Intron Retention
Gene
ENSMUSG00000042133 | Ppig
Description
peptidyl-prolyl isomerase G (cyclophilin G) [Source:MGI Symbol;Acc:MGI:2445173]
Coordinates
chr2:69735868-69736128:+
Coord C1 exon
chr2:69735868-69735897
Coord A exon
chr2:69735898-69735988
Coord C2 exon
chr2:69735989-69736128
Length
91 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAG
5' ss Score
4.2
3' ss Seq
ATTTTTACATGACATTTTAGGCA
3' ss Score
5.97
Exon sequences
Seq C1 exon
AACAACAAAACCAACTCCTCATTTAGATGG
Seq A exon
GTAAAGATTATTTTAATATCTTACAACATACTTTATTTTGTTGTATTAGAGTAAGAAGCTTTTATTTAATAATTTTTACATGACATTTTAG
Seq C2 exon
GCATCATGTTGTTTTTGGGCAAGTGATCTCTGGTCAGGAAGTTGTGAGAGAGATTGAAAACCAGAAAACAGATGCCGCTAGCAAACCATTTGCTGAAGTTCGGATACTCAGTTGCGGAGAGCTGATTCCAAAGTCTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042133:ENSMUST00000040915:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.529 A=NA C2=0.521
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(0.9=33.3)
A:
NA
C2:
PF0016016=Pro_isomerase=PD(24.1=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAACAAAACCAACTCCTCATT
R:
TAGACTTTGGAATCAGCTCTCCG
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types