GgaINT0048374 @ galGal3
Intron Retention
Gene
ENSGALG00000009839 | PPIG
Description
NA
Coordinates
chr7:20090179-20090435:-
Coord C1 exon
chr7:20090406-20090435
Coord A exon
chr7:20090319-20090405
Coord C2 exon
chr7:20090179-20090318
Length
87 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
CTTTTGCTTAAATCCTTCAGACA
3' ss Score
5.18
Exon sequences
Seq C1 exon
AACTACTAAACCTACACCTCACTTAGATGG
Seq A exon
GTAAGTATCTCTTACTTTCTTATTCTTTTTTGAGATCTGCCTTAAAAATTAAATATTAGAATTCTTACTTTTGCTTAAATCCTTCAG
Seq C2 exon
ACATCATGTCGTCTTTGGACAAGTCATCTCAGGTCAGGAAGTGGTGAGAGAAATAGAAAACCAGAAAACAGATGCATCTAGTAAACCATATGCTGAAGTACGCATACTGAGTTGTGGAGAGTTGATTCCAAAATCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009839:ENSGALT00000015996:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.646
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(6.0=100)
A:
NA
C2:
PF0016016=Pro_isomerase=PD(24.1=83.3),PF105004=SR-25=PU(28.0=77.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTACTAAACCTACACCTCACTT
R:
TGGATTTTGGAATCAACTCTCCACA
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]