HsaINT0130263 @ hg19
Intron Retention
Gene
ENSG00000138398 | PPIG
Description
peptidylprolyl isomerase G (cyclophilin G) [Source:HGNC Symbol;Acc:14650]
Coordinates
chr2:170470974-170471234:+
Coord C1 exon
chr2:170470974-170471003
Coord A exon
chr2:170471004-170471094
Coord C2 exon
chr2:170471095-170471234
Length
91 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
3' ss Seq
TTTTTTACTTGACACTTTAGGCA
3' ss Score
6.25
Exon sequences
Seq C1 exon
AACAACGAAACCAACTCCTCATTTAGATGG
Seq A exon
GTAAATATTATTTTATTTATTTTACAACCTGTTTTAAATTAACCTTGAAATAAAAAGCTTTTATTTAATAATTTTTTACTTGACACTTTAG
Seq C2 exon
GCATCATGTTGTTTTTGGACAAGTAATCTCTGGTCAAGAAGTTGTAAGAGAGATTGAAAACCAGAAAACAGATGCAGCTAGCAAACCGTTTGCGGAGGTACGGATACTCAGTTGTGGAGAGCTGATTCCCAAATCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138398-PPIG:NM_004792:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.494 A=NA C2=0.446
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(6.0=100),PF062177=GAGA_bind=FE(5.5=100),PF094685=RNase_H2-Ydr279=FE(6.4=100)
A:
NA
C2:
PF0016016=Pro_isomerase=PD(24.1=83.3),PF062177=GAGA_bind=FE(25.8=100),PF048897=Cwf_Cwc_15=PU(36.4=91.7),PF094685=RNase_H2-Ydr279=FE(30.1=100),PF102784=Med19=PU(16.8=33.3),PF027249=CDC45=PU(31.0=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAACGAAACCAACTCCTCA
R:
TAGATTTGGGAATCAGCTCTCCAC
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)