RnoINT0115976 @ rn6
Intron Retention
Gene
ENSRNOG00000007673 | Ppig
Description
peptidylprolyl isomerase G [Source:RGD Symbol;Acc:620315]
Coordinates
chr3:55972637-55972900:+
Coord C1 exon
chr3:55972637-55972666
Coord A exon
chr3:55972667-55972760
Coord C2 exon
chr3:55972761-55972900
Length
94 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CTTTACACTTGATGTTTTAGGCA
3' ss Score
8.57
Exon sequences
Seq C1 exon
AACAACGAAACCAACTCCTCATCTAGATGG
Seq A exon
GTAAGGATTATTTTAATATCTTACAGCATATTTTACTTTGTTGTGTTAAAAGTAAGAAGCTTTTATTTACTAACCTTTACACTTGATGTTTTAG
Seq C2 exon
GCATCATGTTGTCTTTGGGCAAGTGATCTCTGGTCAGGAAGTTGTGAGAGAGATCGAAAACCAGAAAACAGATGCTGCTAGCAAACCGTTTGCTGAGGTTCGGATACTCAGTTGTGGAGAGCTGGTTCCCAAGTCTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007673:ENSRNOT00000010216:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=NA C2=0.403
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(6.0=100)
A:
NA
C2:
PF0016016=Pro_isomerase=PD(24.1=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAACGAAACCAACTCCTCA
R:
GGAACCAGCTCTCCACAACTG
Band lengths:
159-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]