BtaINT0118705 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020705 | PRSS12
Description
Bos taurus protease, serine, 12 (neurotrypsin, motopsin) (PRSS12), mRNA. [Source:RefSeq mRNA;Acc:NM_001193222]
Coordinates
chr6:7987848-7996858:+
Coord C1 exon
chr6:7987848-7987989
Coord A exon
chr6:7987990-7996652
Coord C2 exon
chr6:7996653-7996858
Length
8663 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
CAAGAATGCTCTGTTTCCAGGGG
3' ss Score
5.35
Exon sequences
Seq C1 exon
GTTTTCCAATCAGACTGATGGATGGAGAAAATAAGAAGGAAGGACGAGTGGAGGTTTTTATCAATGGCCAGTGGGGAACAGTTTGTGATGATGGGTGGACTGATAAGGATGCAACTGTGATCTGTCGACAGCTTGGCTACAA
Seq A exon
GTAAGAAAACCTAATTATTTGGGATGGTTGCTTTACAAAATTTATGATTATTTTACTCTTGTTCTTGTATAAAATTAGTATTTATGATTCAGTTGAAAATACTGGCAGCATGCTGACTTGATTGAGAATGGTAAAGAAATACGGAGTCTGTTTAAATTTTTCTAAACTCTTACAAGACATATACATGATGTTACTCAAGAAATGTAGCTTTTATCTAATAACAAATAGTCCAATAAATCTTGATTATTCATAACACTGGAGAAGGAAATGGCAAGCCACTCCAGTATTTTTACCTGGAAAATCTCATGGACAGAGGAGCCTGGCCAGCTACAGTCCATGGGGTCGCAAAAGGGTCGGACAGAACTTAGCGACTAAACAAAAACAACAATATTCATAACAATGCTTCTGTCAGCCAAACGTATTAACCTTTTCTCTGTGATTTATGTCGCAACACAGTAGCCTTATAAGGGATTCTGCTGTTACTGAAATTACGGTTGGTTCTTGTTATTTGCAGTAGTTTTGTTATTTGTACAGTCACGATGAACATTAAGTTAGGAAATACTGAGCCATTGCTTCTAGCTGCTGCTGCTAAGTCGCCTCAGTTGTGTCTGACTCTGTGCGACCCCATAGACGGCAGCCCACCAGGCTCCCCCATCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCGTGAAAGTGAAAAGTGAAAGTGATAGTTTTTATTTTTTAAAGCATTTATTTATTTTTGGCTGTGCTGGGCCTGTGTGGTGCAGGCTTTCTCTAGCTGCGGCGAGCGGGGCTGCTCTCTAGCAGTGGTGTGTGGGCTTCTCGTGGTGGTGGCTTCTCCTGTTGCGGAGCACAGGCTCTAGAGTGCATTGATTTCAGTAGTTGCAGCATGTGGCCTCAGTCGTGGCTCCCGGGTTCCGGAGCGCAGGCTCGATAGTTGTGGCTCAGGGGCTTATTTGCTCCTTGGCATGTGGAATCTTCCGGCATCAGGAATCGAACCCATGTCACCTGCATTGTCAGGCAGACTCTTTACCACTAAACCACCAGGGAAGCCCCTTAGTTTATAGTTGTTTCTAAAATAAAGCTTAATACATAAATGAGTAATTTAATGTTACTATGACAAAGTGGATGGGCGTCTTCTAGTGTACAAGCTACAGTTTGCCATCAAATGGTATTTAGAAGAGAATCATTTAGCTTTTGATCAGTTTACATATATTTGAACATATACTTGTTTTTATAATTTCCCAGTGAGAGGAGATAAAATTTCATATAAGAACTTATAAATAAGTATGTGATTAGAAAAGGGGATTTTTTCCCCCATGTCTACTTTGAATTATTAAAAATCTTTAATAAAGCATTTATTTGTAGAAATCAATCCAGAAAGCTTTGGAGATGTCAGAGAGGTTTCTTAATAAGAATACCAGAGAACTGTCCCCCACCATCTATATTGCACTTGAGGGTTAGTACTTGGAAACACTGAGAATCAAAATAGCATTAGCTTTTTCATAATGTAAGAAACAGAAATGAAGTAATAAAAATCAGGAACATGAGTGGTAACTAATATAGATGCACTTAGAGTGACAGAAAGTAAAACACACTCTTTAATGGTGTATTACATAATGTCTGACAAAGTCTAGCATATGAGAGCACATTGTTTTTAGAGGGTTGAGAGAGAATGTGTTGCGATCAGCTAACCTCGTTAGGACTAAATAGCCCTGATGGAGATTCCATTCTTTTCGAACTTTGTGTGATTCCATTAGTGCATGCTTCGATATGACATTGCTCTTGCACTCTGTGTTTATTGGAGTTATATCCCTTAAAAGGATTTTCAAAGGGTGTGTCCTTATTGCTTTGACTGTGTGCTCAGTCGTTTTGAGTCATGTCCAACTCTTTGCAACCCTATGGATGTAGCCCACCATGTTCCTCTGTCCATGACAGCAATACCACGCCTCTCTCCAGACAGGAATGTTGGAGTGGGTTGCCATGCCCTCCTCCAGGGGATCTTCTCCACCCAGGGATTGAACCCGTGTCTCTTATGTTTCCTAGCACTGGCAGGCAGCTTCTTTACCACTAACATTACCTGGGAAGCCCGTCCCTATTGCCTTAATAGACACCTAAAACTAACTATATCTAATTTGTAATCTTATGTTTAAATAGCTGCAAAGAGTTTAATTTCTGGCATATTTGTATATGACATTTAAAAGTTGAAGTTACATCATTCTTTTAATTATATCCAACAAAACATAAATATAGTGTTTTGATACTCACATTCATTTAAAAAATACATGAATAAGTTCTTCTCTGACCATCACAAATTTTACATAGTTCCTTTTTCTCCTTGAAATTTTAGTTTAAATTTTCTTTCCCCACAGAATCCTAATGTTACTATATTTTAAAAACTGTGTGTGTGTACACATGCAGAGAGTGAGATAGAGAAAAATTAAATTCTTCTAACAAGATGCTCTCAGGATTTTATGATTTCTGGTACACAACTAATTAAAAACAACAAATTTGATAAATGATTTTTCAGCGTAGGAAAGAAAAGTTGACAAAAGCTCTCATTTCCTAGACCGATGGGTTGGGGTTTGGGTCCTTGGATAACAGGAGGCTTCATTGCTATCGTTTGTTTTGAACTGTTCTTTTGGCCACTTCAGAGGCTTTTAAATCTTGGAGCAATGCACTGTGGTTGGATTGGCTGAGTGAAAGGCATGCCTTTTTTTTTGTGTAGTGGGAAAAGGGAAATTTTGAAAGAGAAGTTGATCTTGACTTAGCAAGACTAGTTTTAGGAGAGAATACACATGGATTTTGATGATCTACATATCAGTTGCCATATCTCTTGGAAAATCATCATCTACTCCCAGGAGTACTTGATACTCAGTTGAAGTGAAGTGAACTGAAGTGAAAGTTGCTTAGTCGTGTCTGACTCTTTGCGACCCCATGGACTGTCCATGGAATTCTCCAGGCTGGAGAGGGTAACCTTTCCCTTCTCCAGGGGATCTTCCTAACCCAGGGATCAAACCCAGGTCTCAGTTTAAAGACTCGTGTATTAGAGCCTATTGTCTCACTGAAATTATCAGCTATGAATTATTTCATGCTTGTAATCCAGAAGTCCCTATAAGTGACACAGTCTTTAATTATTTTTTAAGTCAAAGAAAAATGTATTAGATTTCACTATATCTTTGAGAATGTCTTTAATTATGTACTTTTATTAGTTAAAATGTTCTCTAATTCTAATATACTTGTTAATATATCTAAAATGGTACATTCTCTTTAGTTTGTGCATTGATTGGGAAATTGCTAAGAAATTATCCTTTTGGTTTATTTAATGAGTCTAATTTTATTTTCAACGTGTTTACTTCCACCTGTCATCTACTTTTATGCTATCTATCATGCTTTATTTTTGGTTCTTTGTATGACCTTCTGGCTTTCGATTCACAAGCAATCTAATATTCTTTCTTTGCTGTCTCTAATTATCTGAAATTTCAGCATTCTTGTTTTACTAGAAATTCTGTTTAAATTTTTAGCAAAGATATTCAGATATTTTCTTACCAATTTCACAAATTATCTGTAATTTCCCCTTCTTGAGAAATATCAAGACATTTAGCTTATTGTTATTTGCTTTCTACCTTTGGTCATCCTCACACCCAAAACTGATGGGAATCATCTTGGATATTAGTTTCAGGATGTTATTAATTTTCAATTTTCTTCAAATTATGGCTATTTGAATTTCAAATTGCTCTTCATTACACAGGCACTTATCAGCAATTATTTCCGTTTTTAAAAAAAGATTAATGAGATAACAATTTCTGGCAATTCTGATTAAGAAAAAGAGAATATAAGTAAACATTAGAGAAAAGAAATATAAGCACAGATACAGAGGGTTAAAAACCCCACTCCAGTACTTCTGCCTGGAAAATCCCATGGACGGAGGAGCCTGGTGGGCTGCAGTCCATGGGGTCGCTGATTCAGTCAGACACGACTGAGCGACTTCACTTTCACTCACTATAAACTTACTTTTAGCTAATTAATTTGCACATCTGGATGAAATGAACAATTATCTAGGAAACTGTATATTTCAACAAAAAATATAATTATCAAGAGGAGTCCTTGGCAGTCCAGTGGTTTGGCATTGGTGTTTTCACTGTAGGGGCCCTGGTTCAAGCCCTGGTTGGGGAACTAAGATACCACAAGCCATGCAGCATAGCCCCCCCCCCAAAAAAAAAACAAACCTAAAAACTCGAGCCAAAACAAAAAATTTTTACAGTTGATACAAAAGATAGAAAACCCAAATAAATTAAAATAAATTACTAATGACAGGAGAACTGACTCTTGACTTTTTGCTGAAGAGTTTTGACCAGTCTTTAAGACACAAATGGCTCCTGAGTTATTAATATAAAAGTTGTTGTACAGCAAAGGAAAAAAAGAAATGAAAATCTTTCCATTTACTTTATGAAGTTAATATAATTTGATTTTAAGTCTAGACAAGGATTCATACACAAAAGAAAACTCATGAATCTATATTAAAAATTCTAAACAAAATATTAATGAATTTATCAGCAGTATATTAAAAGAACAATATCACTCATTTTCTGTAAGAATATGAGAGTAGTTCAGCTGAAGCATTCAATTTAATGTATTTTGGTGTGTTGTCTATAAATGAAAACATATATGATTATCATAATAATGTTGAAAAACTACATGATAAAAATCAGTATTCTTGTCTCATATCTCCTAGGATGCTAAGGATAGAGTAAAACTACCTTAACTCTATTATCACAAACAAGCATGAAATAGGAACAAATAAGTGTGCCTGTTTTTACTGCAATGACTCAGTATTATCTGGAGTTTCCACTAATCATTAAGAACTGAGGTATTGGAATTTTTTAAAAGCCAGAATTGGTATATGAATAATGCAGTGTCCACCTAGAAAACCCAGGAGGATCATCTGAAAAAACACTAGAACTAGTGTTTATTAATGTAACAATATGAAATATAAATATTTTTTAAAAAGCAATAATGTTCCTATATGCTAAGTAGAAAAATTTTTTAAATGTCATTTATAAAAGGTACAAAACTCAAAAAAGTTCAAGGAATAAACTTCACAAAAATTGAGGTTTATGTGTAAAAAAGCTATTAGTAAATTTTTACAGAAGCTGTAAGGCTTCGTGATACTCCACAACTCTGAATGGGAAGACAAAATAGAAATTAATCTGTACAGTAAATGCTCTCCTCATTGAAGTCTTTGTTTTTCTTGGTGTGTATGGTGGATGGGGAGAAGGGCTTAACTTCCAAATTCATCTGAAATCAAGTCTATGTGAAATTGGCGCAGGAATAGGCAAAGAGGTCAGTGATGGTTAACAGCCTTGGTTGTGCATGGAAATCACTTTGGGACATAAAAAATATTACCCACTGTGGTAATGGGCCCACTCCCTCTTTACTTAACGTCTTAATTCTACTTTAACTGACATCCAGTGGGGTTCAGATTGTGCTATAATTTAAAGGCGCCCCAAGGTAATTTTAATATGTAGAATTATTGAACTATAAAGACCGAGAAGTGGCTTGTGTACTTACAAGCATGATAAATAAGGAAATAAAAATGCCCTTTAAGTCAGCAGGAAGAGTTATTAGGACAGTTACTTTAGGGACTGAAATAAAGCTAGATCCTTCACTAATATTAACAGAAATAAATTCCAGACAGATCAGAACTGTGATGTACAAAATAAATCAGAAAAATACCTTTCCTTTGCTGTTGCTGCTGCTGCTAAGTCACTTCAGTCGTGTCCGACTCTGTGCGACTCCAGAGACAGCAGCCCACCAGGCTCCCCCGTCCCTGGGATTCTCCAGGTAAGTACACTGGAGTGGGTTGCCATCTTCTTCTCTAATGCATGAAAGTGACAATTGAAAGTGAAGTCGCTCAGTTGTATCAGACTCCTAGCGACCCCGTGGACTGCAGCCCACCAGGCTCCCCTGTCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCCTACCTTTCCTTTATATATTTATATTTTATTATACATATTTCTTGTGTGTGGGGTTGCTTTCCAAAGACTCGTCTTACATGAAACAATGTATATATCCAGAATCTTAAGAAATGTTTATATCTGTTGAATAAAAAGTTTCACTTCTGGGAAGAAATTTAAGCTGCTCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCTACACGACTGAGCGACTTCACCTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTAGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCACACAGAGTCGGACACGACTGAAGTGACTTAGCATAGTCTGTACAATGAGTTTTTTTTTAACAATTAAAAATTGTAGTTAGTATTTTCCCCATAAATGTGTGCCAAATGCTAGCAGTGTGTGGTTGGGGTTTTTTAATGCTTTTATTTTGCAAACTTGATACAATGAGCATTTTTTACTTATACAACTATTGAAAGTTTTATATGTAGAAAGAATTAAAGAGTAACTTTAAAGTTGCCTGTTTGATCTTCCATGACTATAAGTATTTCTAATGGGTTAAATCTTATTTTTATTTGCAATTTATGTCAGAGTAGCCATCACTAATACAGAAGAAATTTTAGGGTACATTTTTGAAATGAATGTACTGCCAGCTACAAGCCTGTGAGGCCAGGTCTCAGCTGAAAGGGGATTAGTCAAGCAAATTCCTCAGATAATCTGTATCAATAAACTACTTTGCCTGAGTTCCTTGCATAACTATAAGGAAAGTATAATAACCTTATCCTAACTAAGTAGAAAGTATTTTAATATTAGCAATCTGGTCTATATTGTCATTTTTAATAAGACAGTTTCTTTTGATTTAAAACTCTCCTGCTTCTCTGTTGGTTGCTGGTTTTTTATTTTATAAATGAAATTTGAGTTATTTGTATATGGTATGCTATTTCCCTCTGTTAGAGAATGCATTCATCAACACACACACACACACACACACACACACACACACATATATAGTATACATACTCATCAACTTTAAAATTTATCTTTTCACTTTCCTTTGGTGGTTTTTAGTGAAGTGGCATTTTTAAATTTTTGTTGAGCTTATCAATCTTTTAATTTAAAGTATACCATCTATGCTTTATTTTTTTAACAAATCTTTCCCTAATTTGAAGTTACAAGGATAATTTTCCTATAATTCAAACATTAAAACTTGGTCATTCATAATCATGTCATTAATTTAACAGGAACTGAGTTTTGAATATGGTATTAGTTTGAAATACTTCACTGAAAATTTTGTATTTGGATATTTAATAAAAAGTAATATATTATTAAAAAAAGAGAGAAACCAAAGAAAAGTGATATACCCAAAGTAATTCTGCCTTCTTAACTCTGGTTCCTGGTTTTCTCTTTCTCAGTTGAAAATTGTGCATTTTTACTTCTAAAGTGGGCTTTAAAAATTCTTAGCTCCCTAGGTAATTATTTAATTCTCATAATTTTCTTGGAAACCAATTTTAAGAGAGTATTATGGTCTGGAAGAGAGTAGATATTTTTGAGAAGATTTTTTTTCCTGCTTTAACTAGAGTTTAAGACTATCATAAATTTTTGACATGCGACTTTCTTATTAGAAATTAAGATGTAATCAAGAAGCCGTGGAATATGATAACAAAGAATGTATAGTTATTACCTCTCAAGCTTTTTTTTTTGATAGTCATGAAATAATTTTTTAGCACATATAGATGCTAATATTAATATATGAAAGTTAAGAAATATATTTGGATGAGAGTGTATGTTGTGATTTATTCAAATGTACGATTGACAGACTCTCCACATCCTCAAGAATGCTCTGTTTCCAG
Seq C2 exon
GGGCCCAGCCAGAGCAAGGAGCATGGCGTATTTTGGGGAAGGGGAGGGACCCATCCATATGGATAATGTGAAGTGTACAGGAAATGAACGGTCCCTGGCCGACTGTGTCAGACAAAACATCGGAGACCACAACTGCCGCCACAGTGAAGACGCAGGAGTTATTTGTGATTATCTTGGGAAAAAAGCATCAGGAAACAATAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020705:ENSBTAT00000027594:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(41.8=85.4)
A:
NA
C2:
PF0053013=SRCR=PD(57.1=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]