RnoINT0118666 @ rn6
Intron Retention
Gene
ENSRNOG00000015353 | Prss12
Description
serine protease 12 [Source:RGD Symbol;Acc:69238]
Coordinates
chr2:227695267-227697840:+
Coord C1 exon
chr2:227695267-227695408
Coord A exon
chr2:227695409-227697634
Coord C2 exon
chr2:227697635-227697840
Length
2226 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGG
5' ss Score
5.07
3' ss Seq
GAAGAACGCTCTGTTTCCAGGGG
3' ss Score
5.39
Exon sequences
Seq C1 exon
GTTTTCCTATCAGACTAATGGACGGAGAGAATAAGAGAGAAGGACGAGTGGAGGTTTTTGTCAGTGGCCAATGGGGAACGATCTGCGATGATGGATGGACCGACAAGCATGCAGCTGTGATTTGCCGGCAGCTTGGCTATAA
Seq A exon
GTAAGGAAGACGGAGTTCTCTGGGATGGTACTTGGGGATGGTTTCTCTGACTCGTATGTTTAGGTTTATTCTAGTGAGTTTCTTTTATGTAAAAAGTTCCTAGTTATCGACAGCATGATTTGGAATTATAAAGAAGCAGTAAGCAGTCTAGCTGTATTTACTATAGTTTCCCAAGAAATATATAATACGAAACATCACAAATGCAGTGTTTCTGTGATAGAGAAACAGCCCAAGGCTGACTATCCAGTACACGGCTGTCCTCACCACAGGCATTAGTTCAGCTTTGCCTGTAACTTAGGCTTCAGTACTGCATCCTCACTCACTGAAGCAACAGCCAGTGCTCACTGCTCACGGGAATCAAGCTGCAAACAGAGCAAGTGCAGATGGAGCTGAGGCAGCCGTCTCTCCTGTCAGGTGTCATGCTTGTAACTACTTGTCTTTTTGTGCGATCTCCTCGGTGCTTTGTATTATTCCTCCTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTATGTTCCTCCTGTTACTTCATTTTAAATTCTCTCCTTTCACATTACATATATGTATGCATGTGTTTATACATACAGAGCGCTCCTGTAGCTTTAAGAGCCCAATATGCTAGTCACACTCTTCTTATTCCAGTACCCAAAGTAAAACTCCCCAATTTTGTGTAATCTTACTGCTTTTTTTTCTGATTTTGAAAGTCAGCTCTCCTGCTTTAGGATTTTCAGGTATTTGCCTTGTTTCTGTATTGCTTTTGAGAGATCTCCTTACACAAGAGGCTGTGATTAGTTAGATCAACCCATTTTGCTCTGTAATATTAGATTCCATAAATACACAACTTACCTCTCTATTGTACTGACCCTGCACATGTATTTGTAGAAGCGGTGGATTTTCCATTGCTATAACTGAAAAGCACAGGCTGAGTAGTTTATAAAGAATGAAGTTTGTCCAACTCACAGTTCTCAAAAAATTGGAAGTTTGAGGAATCTCTCAAGTGAGCACCTTCTCGATGGTGGAAAGCATACAGCTCAATGGCTGTGCAGTGGACTACATGGAGAAAGGGCTAGCTCAGGAGACAGAGCCCAGATGCCTTTACAGGAACTTCTTCAAGATAGCTTTTAATGAGTATACTCAGGAATATAACCGCTAGCATGTCGACTCAAGTTTTTCCAGGGCAGTAAGGCTGCTTTCCTGTGTGGCTACACTAATTTACACACTTAGTAGCATGCTTGAAAGTTATGAATAGCTAGAGTTTACCCCATCCCTAATTCCCAGTGCAATCAAATGCATGGCCATTTGTCTACTGGCCATCAATATTTTCTTTTATATAAAGTGTAGTGTATGACATCTATTTTTATTGAGATGATTTTATTTGTCATCTAGACTGATTTTATTTGTTATTGGATTTTTAAAATTTTGTGTAAATTTTAAGATTTCTTTGTATGATGTGTTTTCTTTAGAAAAGCATTTGCCAATAAATAGGTTTATAAATGTTTATTACAAGCACCAGCTTTCTGATTTATCTTCTTACTTTCCTTAGTGTGGTTTTTAGGAAAGTGGATCAGTCTTTTTATCTTATTTTTATCTTTTCTTAATACTTTTTTTCTAGTGTGATATGTTAAGGACTGTTTTCCTGATTCTAACTTTAATGGCTTTTCCTTCCATGACTGTGTTCAATAACTTATTAGAAATTGAATTAAATATGGAATTTTTAGTTCTCTTCTTCAACAAAGTTTTTAGATTGCATATCCTCAGAAAGTAATGTAAAAATAACAAAAAGGAAATATTCCAAAATAAGCCTTCCTTACACAATTCCCTGCTTTTTCTGTGTTAAGAATTGTACTTTTGCTTCAAAAGAGAGTGAAAGAATTGGTCTCTAGGTCTCTGGCTATTATTTAATCCCACATTTTTCTTGGCACTGTGAAAGTAAAGAGGGAAAGCTTGGGGGTGACTTTATTTTTGACATTCTATTGTGCGTGACTTTCTAAGTCGAAGCTAAATTAGAGGCAGTAGATTCCATAACATACCAAAGGCCTGGGCCAGTGAACAGTGTTCAGTGTTTTGAGTCACAAAAAGTGATTTTCAGTTCACGCCCAAACTAATCTCAATATTCAGACCTGAGGCAGAGTTGAGCTGGTGTGTGCTGAAATCGGCCAGATGCTTGGCTGGCTGACCTTCCGTGTCTGAAGAACGCTCTGTTTCCAG
Seq C2 exon
GGGTCCGGCCAGGGCGAGGACCATGGCTTATTTTGGGGAAGGAAAAGGCCCCATCCACATGGACAATGTGAAGTGCACAGGGAATGAGAAGGCCCTGGCCGACTGCGTCAAACAAGACATCGGAAGGCACAACTGCCGCCACAGTGAGGACGCAGGAGTCATCTGTGACTATTACGAGAAAAAAACATCAGGTCATGGGAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015353:ENSRNOT00000021116:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(41.8=85.4)
A:
NA
C2:
PF0053013=SRCR=PD(57.1=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]