MmuINT0127401 @ mm9
Intron Retention
Gene
ENSMUSG00000027978 | Prss12
Description
protease, serine, 12 neurotrypsin (motopsin) [Source:MGI Symbol;Acc:MGI:1100881]
Coordinates
chr3:123188341-123190080:+
Coord C1 exon
chr3:123188341-123188482
Coord A exon
chr3:123188483-123189874
Coord C2 exon
chr3:123189875-123190080
Length
1392 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGG
5' ss Score
5.07
3' ss Seq
GAAGAGCACTCTGTTTCCAGGGG
3' ss Score
3.82
Exon sequences
Seq C1 exon
GTTTTCCCATCAGACTAGTGGATGGAGAGAATAAGAAGGAAGGACGAGTGGAGGTTTTTGTCAATGGCCAATGGGGAACAATCTGCGATGACGGATGGACCGATAAGCATGCAGCTGTGATCTGCCGGCAGCTTGGCTATAA
Seq A exon
GTAAGGAAGACAGAGTTCTCTGGGATGGTACCTGGCGACGGTTTCTCTGACTTGTATTTTTTTAGGTTTATTCTAGTGAGTTTCTTTTATGTGAAAAGTTTCTAATTATTGACAGCAAGGTGATTTGGAATTATAAAGAACCAGTAGGCAGTCTAGTTGTATTTACTATAGTTTCCAAATAAATATATATATCACATACCATCACAAATACAGTATTTCTGTGCAGCTCGATGACAGTGCTGTGGAGTACATGGAGAGGGGGCTAGTATGGGAGACAGAGCCCGGATGCCTTTATAGGGACTTGTTCAAGAGAGTTTTTAATGAATATACTCAGGAATATAACCATTAGCACATTGACTGTGTGTATATACTCAAGTTTGTCCAGGGCAGTAGGCTGCTTTCCCATGTGGCTACACTAATTTACACACCCATGAAATTTGTGAATGGCTAAAGTTTACCTCATCACTAACCCCAAACCCATGTCCATTTGTCTACTGACTGTCAGTATTTTCTTTTATATAAAGGGCAATGTATGGCATCTATTTTTATTGAGATTATTTTATTTGAGATGTAGCTTGCTTTTTTTTTAATCTAAGTTGTTGGATTTTTCAAGTTTTTGTGTAAACTTTGGGATTATTTTTTTGTAGGATGTGTGTTTTCTCTAGAAAAGCATTGCCAATTATTACAAACACCAGCTTTCTGACTTTTCTTACTTTCCTTAGTGTGGTTTGCAGGAAAGTGGATCAGTCTTTCTATCTTGTTTATGTTTTTGCTAATTATTTTTTCTAATGTGATATGTTAAGGACAGTTTTCCTAGTTCTAACTTTTATGATTTTTTTCCTTTCATGAGTGTGTTCAGTATTTATTCAAAATTGAATAAAATATGGAATTTTTAGTTCTCTTCTTTAACAAAGGTTTTGGATTGTATATCTTCAGAAAGTAATGTCAAAATAACAAAAAGGAAATATTCCAAAATAAGTCTTCCCTCCACAATTCCCAGCTTTTTTTCCTGTGTTTTGAATTATACTTTTGCTTCAAAAGGAAGTGAAAAAAATTAGTCTTTAGGTCTCTGGTTATTATTTAATCACATATTTTTCTTGGCACTGTGGTAGTAAAGAGGGACGTTTTGGGGGTGACTTTATTTTTGACATTCTCTTGTGTGTGACTTTCTAAGTAGAAGCTAAATTAGAGGGAGTTGATTCCGTAAAGTATCAAAGGCCTACGCCAATGAACAGTGTTAAGTGTTCTGACAGTCACAAAAAGTGATGGTCAGTACATGCTTACACTAATTGTAGTATTCAGATCTAAGGCAGAGTTGAGCTGGTGTGTGCTGACGTCTGCCAGGTGCTCGGCTGGCTGACCTGCGGTATCTGAAGAGCACTCTGTTTCCAG
Seq C2 exon
GGGTCCTGCCAGAGCAAGGACTATGGCTTATTTTGGGGAAGGAAAAGGCCCCATCCACATGGATAATGTGAAGTGCACAGGAAATGAGAAGGCCCTGGCTGACTGTGTCAAACAAGACATTGGAAGGCACAACTGCCGCCACAGTGAGGATGCAGGAGTCATCTGTGACTATTTAGAGAAGAAAGCATCAAGTAGTGGTAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027978-Prss12:NM_008939:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(41.8=85.4)
A:
NA
C2:
PF0053013=SRCR=PD(57.1=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTCCCATCAGACTAGTGGATGG
R:
TACCACTACTTGATGCTTTCTTCTCT
Band lengths:
342-1734
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: