BtaINT0120945 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018928 | QARS
Description
glutamine--tRNA ligase [Source:RefSeq peptide;Acc:NP_001029640]
Coordinates
chr22:51488020-51488647:+
Coord C1 exon
chr22:51488020-51488106
Coord A exon
chr22:51488107-51488547
Coord C2 exon
chr22:51488548-51488647
Length
441 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AGATACTGCAATTCTCCTAGGCC
3' ss Score
4.05
Exon sequences
Seq C1 exon
GTTCGTACCCGGTTCCCGCCAGAACCCAATGGAATCCTGCACATTGGACATGCCAAAGCAATCAATTTCAATTTTGGCTATGCCAAG
Seq A exon
GTGAGTGTGTCTGGGGACCTGGCAAGCAGGATGACTGCTTGTTGCTCCCATGAGCAGGTACCAGAGGGGTGTCTGTCCCTACTTTTCTTGCTGCTCCCATAAAGTGTCCCAGAGCAGAAAGAGGCCTTGAAGGGAATACCTAGAAATGTGTGACAGATACCTCAGAATCCACCCAATTGGGCTCATTGAGAAAAAGATCTTGGTGAGGCAGTAAGTTCAAATCTTGGGAAATTCCCAGTGCCACTTCTCGGAGTTAGGATGAGACTGTGTTGTATCTCACATTCGTATGAGATGCCTTGTTTAGGGCATTTAGATATAGGAAGGTGAGTGAAAGATATTTTCAATTCTGACATGGGTGAGCTCTGAGAAGGTCCCAGTTTAATGAGCTGGATCGTAGGAGCTGATGATAACGGGAGCTCACAGATACTGCAATTCTCCTAG
Seq C2 exon
GCCAACAATGGGATCTGTTTCCTGCGCTTTGATGACACCAACCCTGAGAAAGAGGAAGCAAAGTTCTTCACTGCCATATACGACATGGTGGCCTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018928:ENSBTAT00000025191:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0074916=tRNA-synt_1c=FE(9.3=100)
A:
NA
C2:
PF0074916=tRNA-synt_1c=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGTACCCGGTTCCCGC
R:
CCAGGCCACCATGTCGTATATG
Band lengths:
182-623
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]