GgaINT1023090 @ galGal4
Intron Retention
Gene
ENSGALG00000006853 | QARS
Description
glutaminyl-tRNA synthetase [Source:RefSeq peptide;Acc:NP_001012800]
Coordinates
chr12:11583474-11583762:+
Coord C1 exon
chr12:11583474-11583560
Coord A exon
chr12:11583561-11583662
Coord C2 exon
chr12:11583663-11583762
Length
102 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TACTCTCCTCACTTCCCCAGGCC
3' ss Score
9.02
Exon sequences
Seq C1 exon
GTGCGGACGCGGTTCCCTCCTGAGCCCAATGGCATTCTGCACATCGGCCATGCCAAGGCAATCAACTTCAACTTTGGTTACGCCAAG
Seq A exon
GTGAGCGCCGCCAAGCCCTACGGCCTGCTCCCATCTCCCTGCGTCCTCTGGCTGTGTCCAGGCCTTGTGGGGAGCAGCTGCTTACTCTCCTCACTTCCCCAG
Seq C2 exon
GCCAACGGGGGCATCTGCTTCTTGCGCTATGACGACACCAACCCTGAGAAAGAGGAGGAGAAGTACTTCACGGCCATCCGGGAGATGGTGGAGTGGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006853:ENSGALT00000011085:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0074916=tRNA-synt_1c=FE(9.3=100)
A:
NA
C2:
PF0074916=tRNA-synt_1c=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCGGTTCCCTCCTGAG
R:
AAGCCACTCCACCATCTCCC
Band lengths:
181-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]