MmuINT0130108 @ mm9
Intron Retention
Gene
ENSMUSG00000032604 | Qars
Description
glutaminyl-tRNA synthetase [Source:MGI Symbol;Acc:MGI:1915851]
Coordinates
chr9:108413863-108414913:+
Coord C1 exon
chr9:108413863-108413949
Coord A exon
chr9:108413950-108414813
Coord C2 exon
chr9:108414814-108414913
Length
864 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TGGTCCTCCAACTCTCTTAGGCC
3' ss Score
6.55
Exon sequences
Seq C1 exon
GTACGTACGCGGTTCCCTCCAGAGCCCAATGGAATCCTGCATATTGGACACGCCAAAGCCATCAATTTCAACTTTGGTTATGCCAAG
Seq A exon
GTAAGCATTTGTCTAGGTCCTGGCAAGTAATATGATCACTGTCTACTCCCATGACTGCATTCCAGAAAGGTATATTTCTGTCTTGCCTTTTGTAGCTGATGACAGAGGCCCTAGAGAAAAACTCCATGTAACAGCTATTGTCAGGAAATACTGGGTTAATGGGGAAAATTAAAATGGTTCTTTAGATAGGGTTTCACTGTAGAGTCCTGATGGCCTTGAATTGTGGCGATCACATGCCTCTGCTTCCCAGGTACTGGGATTAAAGGGGTGCACCGCTATGCCCCATGGAAGATGCATTTCTTCAATTCCTTATATTAACTTTTCAATTTATTTTTTGGCAGTCATCAATAGAAGACATTAATTAAAAAAATATTCCTAGGTGGCTGAAAAGATGGCTCATTGGTTAAGACCAGTTGTTGGCCTTGCAGAGAACTTGGTTCAGTTCCCATCACCCACATGGTGGCTTATTCAGTTTTCGGGGATGTTTTCTTCTGAAATCATCTTTTGCCCTCTGAGGGCACTGGGCACACACATGGTGAAAGCATATGCATGCAGGCAAAACACTCAAACACATAAATCTAAAGGGAAAAAAATGATGTGTGTGTGTGCACGAGCGCAAGCACTCATGCATACTCATGCTATTGAACATTCATGGATGTCAAAGACAGACTTTGGTGGAGTTGGTTCTTTTCATCATAGACTTTGAGGATCCAACTGAGGTCATTCAGCTTGCTAGGCAACTCCTCTTATCTGCTGAACTATCTCATTGGCTGCCTTTTACATTTGATAAGCTTGGACTTTGAGAATGTAAGGCTAATGGTATGGACTCTAGGGCTGATGGGTGTGGTCCTCCAACTCTCTTAG
Seq C2 exon
GCCAACAATGGTATCTGTTTTCTGCGCTTTGATGACACCAACCCTGAGAAAGAAGAAGCAAAATTCTTCACTGCTATTTATGACATGGTGACCTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032604-Qars:NM_133794:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0074916=tRNA-synt_1c=FE(9.3=100)
A:
NA
C2:
PF0074916=tRNA-synt_1c=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGCGGTTCCCTCCAGAG
R:
CCAGCCAGGTCACCATGTCAT
Band lengths:
182-1046
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: