Special

HsaINT0135698 @ hg19

Intron Retention

Gene
Description
glutaminyl-tRNA synthetase [Source:HGNC Symbol;Acc:9751]
Coordinates
chr3:49138008-49138874:-
Coord C1 exon
chr3:49138788-49138874
Coord A exon
chr3:49138108-49138787
Coord C2 exon
chr3:49138008-49138107
Length
680 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
AGATGGTGCAACTTTCCTAGGCC
3' ss Score
3.72
Exon sequences
Seq C1 exon
GTACGTACCCGGTTCCCGCCAGAACCCAATGGAATCCTGCATATTGGACATGCCAAAGCCATCAATTTCAACTTTGGCTATGCCAAG
Seq A exon
GTAAGCATGTGTCTAGGGACCTGGCAAGCAAGATGACCACTTGCTGTTCCCATGAGTGGATACCATATCCCTGCCTTGCTGTCTGCTCCCAATAATGTACCCAGGTGGGCAGAGGCCATGGAAAGGAACCACATGTGTGACAGATACCTAGGAATCTATTGAGCTTATTGGAATAAATAGCTCCCTCCCTCTGAGGAGTCAGTGAGTTCAAATTTGGGGGAGTTGCCAGTGCAGTCCCTAGGCTTAGAAAGATGCTAGGTTAGATACAGGAAGGTGAGAGAAGCTCTTGAAGACATTTTTAATTCTGACATGAGTCCGGGTTGGGTGGCTCACGCCTGTAATCTCAACACTTCGGGAGGCTAAAGTGGGTGGATCACTTGAGGTCAGGAGTTCGAAACCAATCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAGTTAGCTGGCCATGGTGGCACACGCTTGTAGTTTCAGCTACTGGGAAGCTGAGGCAGGAGAAACCCAGGAGGTGGAGGCTGCAGTGAGCCAAGATGGTGCAAGATAATCAAGACTCCATCTCAAAAAAAAAGAAAATTCTGACATGAGAGTGCTCTGTGAATATCCTAGTTTGATAAACAGGATTGTGGGGCTGATGGATGATGTGGGAGTTCACAGATGGTGCAACTTTCCTAG
Seq C2 exon
GCCAACAATGGCATCTGTTTTCTGCGTTTTGATGACACCAACCCTGAGAAGGAGGAAGCAAAGTTCTTCACGGCCATCTGTGACATGGTAGCCTGGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172053-QARS:NM_005051:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.069 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0455710=tRNA_synt_1c_R2=PD(7.7=20.0)
A:
NA
C2:
PF0074916=tRNA-synt_1c=FE(11.0=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGTACCCGGTTCCCGC
R:
TAGCCAGGCTACCATGTCACA
Band lengths:
185-865
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development