HsaINT0135698 @ hg19
Intron Retention
Gene
ENSG00000172053 | QARS
Description
glutaminyl-tRNA synthetase [Source:HGNC Symbol;Acc:9751]
Coordinates
chr3:49138008-49138874:-
Coord C1 exon
chr3:49138788-49138874
Coord A exon
chr3:49138108-49138787
Coord C2 exon
chr3:49138008-49138107
Length
680 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
AGATGGTGCAACTTTCCTAGGCC
3' ss Score
3.72
Exon sequences
Seq C1 exon
GTACGTACCCGGTTCCCGCCAGAACCCAATGGAATCCTGCATATTGGACATGCCAAAGCCATCAATTTCAACTTTGGCTATGCCAAG
Seq A exon
GTAAGCATGTGTCTAGGGACCTGGCAAGCAAGATGACCACTTGCTGTTCCCATGAGTGGATACCATATCCCTGCCTTGCTGTCTGCTCCCAATAATGTACCCAGGTGGGCAGAGGCCATGGAAAGGAACCACATGTGTGACAGATACCTAGGAATCTATTGAGCTTATTGGAATAAATAGCTCCCTCCCTCTGAGGAGTCAGTGAGTTCAAATTTGGGGGAGTTGCCAGTGCAGTCCCTAGGCTTAGAAAGATGCTAGGTTAGATACAGGAAGGTGAGAGAAGCTCTTGAAGACATTTTTAATTCTGACATGAGTCCGGGTTGGGTGGCTCACGCCTGTAATCTCAACACTTCGGGAGGCTAAAGTGGGTGGATCACTTGAGGTCAGGAGTTCGAAACCAATCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAGTTAGCTGGCCATGGTGGCACACGCTTGTAGTTTCAGCTACTGGGAAGCTGAGGCAGGAGAAACCCAGGAGGTGGAGGCTGCAGTGAGCCAAGATGGTGCAAGATAATCAAGACTCCATCTCAAAAAAAAAGAAAATTCTGACATGAGAGTGCTCTGTGAATATCCTAGTTTGATAAACAGGATTGTGGGGCTGATGGATGATGTGGGAGTTCACAGATGGTGCAACTTTCCTAG
Seq C2 exon
GCCAACAATGGCATCTGTTTTCTGCGTTTTGATGACACCAACCCTGAGAAGGAGGAAGCAAAGTTCTTCACGGCCATCTGTGACATGGTAGCCTGGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172053-QARS:NM_005051:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0455710=tRNA_synt_1c_R2=PD(7.7=20.0)
A:
NA
C2:
PF0074916=tRNA-synt_1c=FE(11.0=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGTACCCGGTTCCCGC
R:
TAGCCAGGCTACCATGTCACA
Band lengths:
185-865
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)