Special

RnoINT0121180 @ rn6

Intron Retention

Gene
Description
glutaminyl-tRNA synthetase [Source:RGD Symbol;Acc:1359448]
Coordinates
chr8:117301146-117302282:+
Coord C1 exon
chr8:117301146-117301232
Coord A exon
chr8:117301233-117302182
Coord C2 exon
chr8:117302183-117302282
Length
950 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
GGTCCTTTTAACTCTTTTAGGCC
3' ss Score
8.33
Exon sequences
Seq C1 exon
GTACGAACCCGGTTTCCCCCAGAGCCCAATGGAATCCTGCATATTGGACATGCCAAAGCCATCAATTTCAACTTTGGTTATGCCAAG
Seq A exon
GTAAGCATGTGTCTATGTCCCTGGCGAGTGATATGATCACTGTCTACTCCTACGACTGCATTCCAGAAAGGTATATTTTTGTCTTGCTTTTTGTAGCTGATGACAGAGCCTCTAGAGGAAAACTACATATAAGAGGTCTCGGCAGGAAATACCAGGTTTATGGGAAAAAACTAAAGTAGTTCTTTTTTTTTTTTTTTTTTTTTCCGGAGCTGGGGACGGAACCCAGGGCCTTGAGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCTAAAGTGGTTCTTTAGGTAGGGTTTCACTGTATAGTCCAGATGGCCTGGAATTGTAGAGATCACGTGCCTCTGCTTCCCAAGCACTGGGATTAGAGGTATATACCTGTAGGGCCCATGGAAGATACATTTATTTAACTTTTCAATTTATTTTTTGGTGGTCATCAAAAGACATTAATTTAAAAAGTAGTCCTGGGGGCTGAAAAGGTGGCTCAGTGGTTAAGACCAATTGTTGCCTTGCCATTAGTTTTAGTTCAGTTCTCACCCATATGGTAGCTTGTAAGTATCCATACTCCAGTGTTAGGGGATATTTTCTTCTGATACCTTCTTCTGACCTCTGAGGGTACAGCACACATACATGGTGTGAGCACATACATGTAGGCAAAACACTCTGAAAAAACACATACATCTGAAAGAAAAATGGTATTTGTGTGTGCAAGCACTCATACACACTCATGCTGTTGCACATATGTGGATATCAAAGACAAACCTTGGGGAGTTGGTTCTTTCCGTGATAGCCTTTGAGAATCTCAGGTCATTAGGCTTGTGTCTACTACTTTTATCTGCTGAACTATCTCATTGGCTGCATTTTGATAAGCTGGAGATCTGAGAGTGTGTGGCTGATGGTGTGGACTATAGGGTTGATGGATGTGGTCCTTTTAACTCTTTTAG
Seq C2 exon
GCCAACAACGGTATTTGTTTTCTGCGTTTTGATGACACCAACCCTGAGAAGGAAGAAGCGAAATTCTTTACTGCTATTTATGACATGGTGACCTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060912:ENSRNOT00000082628:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.103 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0074916=tRNA-synt_1c=FE(9.3=100)
A:
NA
C2:
PF0074916=tRNA-synt_1c=FE(11.0=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCCGGTTTCCCCCAGAG
R:
CAGCCAGGTCACCATGTCATA
Band lengths:
182-1132
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]