Special

HsaINT0135698 @ hg38

Intron Retention

Gene
Description
glutaminyl-tRNA synthetase [Source:HGNC Symbol;Acc:HGNC:9751]
Coordinates
chr3:49100575-49101441:-
Coord C1 exon
chr3:49101355-49101441
Coord A exon
chr3:49100675-49101354
Coord C2 exon
chr3:49100575-49100674
Length
680 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
AGATGGTGCAACTTTCCTAGGCC
3' ss Score
3.72
Exon sequences
Seq C1 exon
GTACGTACCCGGTTCCCGCCAGAACCCAATGGAATCCTGCATATTGGACATGCCAAAGCCATCAATTTCAACTTTGGCTATGCCAAG
Seq A exon
GTAAGCATGTGTCTAGGGACCTGGCAAGCAAGATGACCACTTGCTGTTCCCATGAGTGGATACCATATCCCTGCCTTGCTGTCTGCTCCCAATAATGTACCCAGGTGGGCAGAGGCCATGGAAAGGAACCACATGTGTGACAGATACCTAGGAATCTATTGAGCTTATTGGAATAAATAGCTCCCTCCCTCTGAGGAGTCAGTGAGTTCAAATTTGGGGGAGTTGCCAGTGCAGTCCCTAGGCTTAGAAAGATGCTAGGTTAGATACAGGAAGGTGAGAGAAGCTCTTGAAGACATTTTTAATTCTGACATGAGTCCGGGTTGGGTGGCTCACGCCTGTAATCTCAACACTTCGGGAGGCTAAAGTGGGTGGATCACTTGAGGTCAGGAGTTCGAAACCAATCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAGTTAGCTGGCCATGGTGGCACACGCTTGTAGTTTCAGCTACTGGGAAGCTGAGGCAGGAGAAACCCAGGAGGTGGAGGCTGCAGTGAGCCAAGATGGTGCAAGATAATCAAGACTCCATCTCAAAAAAAAAGAAAATTCTGACATGAGAGTGCTCTGTGAATATCCTAGTTTGATAAACAGGATTGTGGGGCTGATGGATGATGTGGGAGTTCACAGATGGTGCAACTTTCCTAG
Seq C2 exon
GCCAACAATGGCATCTGTTTTCTGCGTTTTGATGACACCAACCCTGAGAAGGAGGAAGCAAAGTTCTTCACGGCCATCTGTGACATGGTAGCCTGGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172053:ENST00000306125:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.133 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0074916=tRNA-synt_1c=FE(80.0=100)
A:
NA
C2:
PF0074916=tRNA-synt_1c=FE(11.0=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGTACCCGGTTCCCGC
R:
TAGCCAGGCTACCATGTCACA
Band lengths:
185-865
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development