BtaINT0128938 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031917 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr9:92834951-92839506:+
Coord C1 exon
chr9:92834951-92834995
Coord A exon
chr9:92834996-92839344
Coord C2 exon
chr9:92839345-92839506
Length
4349 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
CATTCTTCTTTTTTCATCAGTGT
3' ss Score
8.29
Exon sequences
Seq C1 exon
TTCTATAAACATGTGGTACAGAGTGTTGAGAAATTCATTCAGAAA
Seq A exon
GTAAGTATATAGTTTTCCATGTACATGCTAAAGTTCTGTAACTGTAGACTAACACCTTGTGCTATTCTCTTTTCAAATACCCAACTTTAAATTGTTTTGATGACTGTTCAAAAGTGATTCCATTTGTTTTAATTTCTAATTAAGAAATAAAATGAAACTGCCTTTCAAATAATTCTAAAAACGAAAGCTTTCAGGTAGATGTGTTTGTTAATTTGCATTGCCATAGTGAGCATCTGTTCCATGAAGAAAATATTTCAGTATGATTTTTTTAATGAAATTTTAGATTCATTGCTTTTTATATAGCCTTTAGAGAAATTCTCCTTATTCATTTCAAGCTTAATGCCTAGAGAGCAGTCTTCCTTGTAGATAAGATGTAGTAAATGTAGTAAAAATGCTAGCCGCTTTTCTTCTGCTGATTCATTTTGTTCATCCGTTAGGACAGTATGCATCTCTACTTCTTATTATTAGACCTGAAGTTCCATTTTCCAGGGTAAGCAGAGGGAGACAAAGTTGAAAACAGCTGTTTTTGCATACATTTAGTAATTTTTTTGGTAACCAAAGCCCAAGGTGGCTAGGTTATATTTCTTTGCCCCTTGTGATCAGTGCCTTATCTCTGCCGCTTTTTTTGGGCAGGAGTACCATAAGACTTAGGATTTGTAAAATGATACTGTAGGAAATCTGTCACTGAATTGAGGTTTAGTATTCTGCCCTTTGTTCACTTGCCTAGATGTGAGCAGAACCAGTGTGACAATCAGAGGTGAATCAAAGGACATAAATTGCAGTGTGTTTCTTGAGTGAAAATAGCTGACCGGAGGAGGGTGCGTGGATCAGAGTAGTGTTACTGCGTCTCCAAACTATCTGGATAATCTTGAATAAATCAGTTAACTTTTATTTGATTCAGCTTTTTTCCCCTCTTAATATCTTGTTTTCTCAAAACTTAAAGTATTGATAAAACATATTTTGAGATGAACAGCTAGTGAATTGAAGCTTAAGGTATGGGGTAAAATAACAGGTATGCTGTATGACTAAGGTAAATCTAGCTGTAAGATAGAAATGTTGGTGGTTAGAAAGTTTCATTGTTATAAAACTTTAAAAAGATTCAAATGTCTAAACAGTGTGTCTTAAACTTTTTTTGTGCATAAGAAACTTGCACAGATTACCTAGGGATCTTGTTGAAATGCAGGTTCTGATTCCCTGAGGGTGGGTCATTTAGACTCTGGAAAACCAAAGCAGATCAGGCTCTGATTAAGTGTGTCCTGAGAGTTGTTCAGTCTCTCATTGGTATCCAACTCTGTGCGACCCTATGACTGCAGCACACCAGGCTTCCCTGAGAGTAGACCTTGTTAAAGCCCTGGATGCTCTGACTCTCTTGGAAAGGTTCCTTTTCCTCTCCTTCTGTTGGAAGCATGCAGTATTCACTTCAGAATTCGTTTGGTATCAGGTATAACTGTGTCCTGAGACAGCCCTCTTTTCTTACATGCTGCTGTCAGCATCATTTAGTGCTTTGTAAGTGCCACAATTAATTCAAAGTATAAAAAAATCCCTCATGATATTGGAGGCTTAGGAATTCTTGTGTTTTTGCTGATAGAACTTGAACAGTTGAAAAACATTTCAGATTTTTTTAGTCTTAATTCTTCTCTCAAGTTTCTAGTTGGTAACGTAACCAAGTTTACCAAATACTGTTCTTTTAAAGCTTTTCTACATTTAAATCATACATAAGTTTTTTTTTTTTTTTTTTGCCATTTTATGTGGCAGGCACATAAAAATACCTAGTGTTACCAGTGAAGGAAATTCCGTACTGTAACATCATAATATGGTGTTTCTAAAGGTTATTGTGAAAGAAGTGTTCATCTTTATAGCTTAATACTAAAACCCCTGACACTTTTGAAGCTTTGGAATCTTCATAGTAGGGAAGAAAGGCCCATTCATTGTGTTGTGTACTCATGATTCTTATGTACTGTGAGTTTATAATCAAGAATTTTTGTTATAAATCAAAGAAAAAGGTGTATTTGTTTTTTTTTTAAACTCACTACACTAATCGCTTTTATTACTTACCACTCAGTATTTAAAAACTCTTACCAGCAACTTAGCAATTTTATTTAGCCTTACTCTCAAGATAATCATTTCTGTAAAATAATACATTAAATATGAGATTATTTTGTCTGTTTTTTCAGCATTGAGGAATAGATGACTTTTAACAAAGAAATGTGTTGGGTTTTCATTAAATTTAAACAATTTTTTTAGTGGATGTATTATTTGCCTGGCTAGGTAGATAATTATTTGCTTGTATACCACCTTATGACAGAAAGTGAAGAGGAACTAAAAAGCCTCTTGATGAAAGTGAAAGAGGAGAGTGAAAAAGTTAGCTTAAAGCTCAACATTTCAGAAAACTGAGAACATGGCATCTGGTCCCATCACTTCATGGGAAATAGATGGGGAAACAGTGTCAGACTTTCTTTTTTGGGCTCCAAAATCACTGCAGATGGTGATTGCAGCCATGAAATTAAAAGACGCTTACTCCTTGGAAGGAAAGTTATGACCAGCCTAGACAGCATATTCAAAAGCAGAGACATTACTTTGCCAACAGAGGTCCGTCTAGTCAAGGCTATGGTTTTTCCTGTGGTCATGTATGGATGTGAGAGTTGGACTGTGAAGAAAGCTGAGCGCCAAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACTAGTCCATTCTAAAGGAGATCGGTCCTGGGTGTTCTTTGAAAGGACTGATGCTAAAGCTGAAGCTCCAATACTTTGGCCACCTCATGCAAAGAGTTGACTCATTGGAAAAGACTCTGATGCTGGGAGGGATTGGGGGCAGGAGGAGAAGAGGACGACAGAGGATGAGATGGCTGGATGGCGTCACCAACTTGATGGACATGAGTTTGAGTGAACTCCGGGAGTTGGTGATGGACAGGGAGTCCTGGTGTGCTGCACTTCATGGTGTCGCAAAGAGTCAGACGTGACTGAGTGACTGAACTGAACTGAACGGTAGTCAAAGGAAAATAAGTCAGATATATGAACTGAGGAACAAATATGCTAGATTTGGGGGGAACATCAGTGAAAACTATTTCAGACTTCTAAAACAATAACTTTGAACAGAGCAGACAGTTTTGAACCTTTGGTTGGTTAAACCTAAAACTTTAATGTCCACACATCAACATTACTGCCCTTTTATTAAATATTTCAAGTACTAAACAGCCAGAACCTTGCAATAGATACTTATAAATTGGTGGTATCAGTCTCTTCATTTTTTTAATAATGACCTTAAGAAGAAGGGATTTGAAGGAACAAGTGATGGATCATCTAGTCTTTTTGCAGAATGAAGTCACTCATTGTCTTGACTGAAAATACTGTTTAGAAACATGTATCTGTGTGTTGGAGGTGGATTGAAGATCCTTTACTCACTGGTCCTTGGGTCTAAGAAATTTTTCAAGAATGCAGTTTTGATTTAGTGCTATATATGATTTCTATGAAATGATTCTGGGTGAAATGCTTACCTAATTACACTCAAAATTTGAACCTGCTTTTAGCAGCCATAATTTCATTTTAATTAGTATGTATTTGGGAGGCAGGTTTTCTCATGCTTCTGGACATGGAAAAAATTGAAGCAGTGAAGTTGATGGTGAAGGGTTCTTCGTTGTGCTTAGGGAAGGTCCCAGAAGACTGTCATGTTCTTCAGACTATAAGAAGGATAAGAAACACTGATCAGTGAAGCAGCTAAAACATATTTTCGTAGGACAGATTTTTAGAATCATAATGGTAGTGTCTTATCTTTCATATAGGTTTGCATTTGAGAAAAGTTTTAAAACTTCAGGCTCACTGTGTTTAGAATGTTGTAATTTGCCATTTGATTCCTTCCTTCATTCATATAGAGATCCTTTTCCTGTGTGTTTTTTGGATGAAGTCTAAGGCTTGTTGGCAGTAGTTTTTTACCAGAGCTTTTCTTTCTTGAATTCACTGCTTGAATTCACAAGTCATTAAACTATATATATATATATATATTTAATTTTAACCACACCTTTTATTTGTTATTGTTCAAGCCAGTTACACAGGGCTGTTTTGGAACTTAGGTGATTGGCAGTTGAACTGAATATGTAGAGTAGCCAAAGTAGAGTCTTTCAAATGCCATTCCAGAGACAGATGGTGTGGAATGGTCAACCTCTGAGTGTTCATCACCTCAGTGTGAGCAGTGTGTTTGTGTTTTTATAGATTTATGGTGACATTTGTCTGTTGAGAATTTTAACCTTCTCATTTGCTTCCTTTCCCATTCTTCTTTTTTCATCAG
Seq C2 exon
TGTAAACCAGAATATAAGGTGCCTGGACTTTATGTTATTGACTCTATTGTACGACAATCTCGACATCAATTTGGTCAAGAAAAGGATGTGTTTGCACCCAGATTTAGTAATAACATCATTAGCACTTTCCAGAATTTATACCGTTGCCCTGGAGATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031917:ENSBTAT00000045257:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF048188=CTD_bind=PU(72.7=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]