GgaINT0081285 @ galGal4
Intron Retention
Gene
ENSGALG00000013635 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr3:49608006-49610353:+
Coord C1 exon
chr3:49608006-49608050
Coord A exon
chr3:49608051-49610191
Coord C2 exon
chr3:49610192-49610353
Length
2141 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TAAATTATTGTTATTTGTAGTGC
3' ss Score
4.81
Exon sequences
Seq C1 exon
TTCTACAAGCATGTTGTGCAGAGTGTTGAGAAATTCATTCAAAAG
Seq A exon
GTAAGTCAGTAACAGATATTTTGTGTTATCACAGAGAAGAGCTTTCAGTGTTGTAGAGATTATTCAATACAGTTGAGTCTTAGGTATACAAATTGTATTTTTACCCCACAACAGTATATTTCAGTTTTCAGTTGCATTCAACTTCCATTAGTAATCAGTAGGTGGTCATAATTGATGCAGAAAAACAAATATTTTGTCCTCATTTTTGTATGTGCGTTACACTGGGATTTCAATGACTGCAGATACTGTGTTGAAACTACTTCTTTGTGTGTGTTCACTTAATGCTAAAAGAGGCTTATGAACATCTAAGAGCAAAGTAATTTAAAGTGGTCCAATGAGAGACAGTTGCTTTTGCTTTTCTAACAGGTTTTTGGCACAGTTTTTAAAATTAAAGATGACCTTTCAGCTTTATCTCTTCTGTAGTGTGCAGTGTGGTGTTTTTGTTTGTGATTCCTGTAAATTAAAACAAGTAAATGTGACTATACTAGAATTACTTTGGGGTAAGATGCTGTATTAATTTTAAGATTCTGAATAACAAAGAATTTTATTGTGCTTTATTTTCTTGGAGCAGTTAATTTTTCTTGAGTAAAACTGCACTTTATCTATAGCTAGAATATAGATTCCAATTTTTGAGTCTTTTCTCCTTGCCTGCATCGTGTTTGATAGTTCAGTTGATCATTTTCTATGGAATTTCTTTTAAATACGAATCAGCTCTGATTGAATGCCTTTTTATTTTCCCTAACAAGCTAGAGAAGTTGGTTTGTTAATGCTACAATGCTGGGCACAGTTTTTATACAGTCGTCCATTTTACTTTACAGTCTATGTTAGTAACCTGTCTTCCTCCTTTAATTCCATATATGGAAAAGTTGTTGTATGTGTATTTCGTGGCAGTGGTAAAGGCTATTAATTTACTTCACAAAGACTGCTAGTATTTTGTCAGGCAGATGTCTTCTGAGGAACTGCATCTTTCCATTTCTCAGAAAAGGGATGAGTATCCTCTGATCCCTGTTTGATAATATAGATGGATATTGGAGGATGAGAACAGCTGTGCACCATATTACTCATATCCTATGCATCAAAGTAACACTTGGAAATGTTATGTCCCAGTCAGAATTTTACTTCATCCTACTTTTTCCTTGTGTTTTTATCATCCTTTTACTTTTCCTCTATATTATCTTATTTCTGTATATCCTATGCTTTTAGCACTTCACCTAGTATATTTAGTGTTACCTTATAAAATTTCTACAATTTTTATTAATTTGAATATTGTGAAAAGTTTTATACCTGCATGCTGTTTATGCAGAAAACTTTTATAATCATTTAGCTAAAATGTGAGTAGCTAAAATACATTGAAGTTATTTTCTGAAGACGTAATACATCCAATTATGTATTAATACTATAGCACACGTTTCTTCTTAAATGTATGCCACATAATCTTTAAAATCAAGACACCACACTTACAAACACCAGACCATGTTTTGAGCCAAATGAATGCTTTATGAAAGTTGCAACAGTCAGCAAATCCCTTTTCAAAACAGAAGGCCTATACGTAGGCTGTAATAAAACTAATAGTCCAGAGAGTTTGTATTTTTATAATGAAAATTTTATCATGTTAATAAAAAAGACAATATTACCTTTGAAAACAGTGAATTCTTTTTTAGAGGATACAACAGATTTTTCTATGGAATGTCTCAGGTTCTCTTGAAGTTGTGTTAGTAATTGAAGTGCATACATTGTTGTTTGTAAATGATGCAAGTTTTCCACAGTTTTAAAGTAAGTGGTACATTCTCAACGAAACAGATATGTCTTTAAAATGTGTCTTTAAAAAAGATTTGTTGTTCATGTGCTGATTTTTAATAGCCATTCTCTGAAGAGGTTTTTTATTTTGTTAGTGGTAGCAAATGAGATTCAAGCCATATACGTATTTGTAGAGTATGTATAGCTGTGACAAATTGAGCATTAAGGGTTAGCTGGTTCTATTTGAGATAGTGTTGTACTTCAGTAAAATTTGTTAAATAGTGAACATTTTGATAATACTTGGACCCATTTAAAAATTAGATCGAGCTCTTTCTGTTTAGTCTGCCAGTAATGATTTGTGTTATTTTTGATGTGTGAATATTATAAATTATTGTTATTTGTAG
Seq C2 exon
TGCAAACCAGAATACAAGGTGCCTGGTCTGTATGTCATTGACTCGATTGTGAGACAGTCCCGGCATCAGTTTGGACAAGAGAAGGATGTATTTGCTCCAAGATTCAGCAATAACATCATCAGCACTTTTCAGAACTTGTATCGTTGTCCTGGGGATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013635:ENSGALT00000022182:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF048188=CTD_bind=PU(72.7=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]