BtaINT0130191 @ bosTau6
Intron Retention
Gene
ENSBTAG00000023933 | SEC16A
Description
SEC16 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr11:103956426-103958927:-
Coord C1 exon
chr11:103958797-103958927
Coord A exon
chr11:103956524-103958796
Coord C2 exon
chr11:103956426-103956523
Length
2273 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
ACTGTGTGTGTGTGTTTCAGGCA
3' ss Score
11.62
Exon sequences
Seq C1 exon
GACGTCTACGGCCTCTACGACCCCAGGTACAGGCCTTCTGACGGCGCTGCCTACGTGGACCCCTGTCGCTGCCCCGAGCCCGAGCGGCCCGGCTCCCGGGCCAGTCACTGCTCCGACCGCCCGGTCGCCAG
Seq A exon
GTGATGCGTGTTTGTGTTGCCGGCTGTCGTTGTAGCTTAGTGGTTCGGGGGAGGCCATGTTTGCAGAGAATCATACAAACCTGTTGGGTGTGTGTGTACGTTTCGTGGGTGTGGACAGATCGAAGGATGCATGTTTGAATCAAACTGAGCCCGCTACCCAGCACAGCCACAGGCACGTCGGCAGGTGGTCTTGGTCAGGCCAGACCCTGGGCGGGGCCACCAGGGAGGCCCCCTGCTCTCAAGCAGGGCTTCTCCTGGCCTGGGCAGTGGTCCTGTTGCCTGTGGTCACATAGCAGCTTTTAACCTGTGGAGGTTGTTCCCCACACTGGTTCCAGAGGCGCCCAGGTCAGGCAGGCTCAGGCTGCGACCTGGGGTGATCTGTTGGTGGCAGCAGCCGCGAGCCTGGGCTGTCTGCCTGGCGCTGCCTCCTGGGTCGGGGGCCGCGAGCCTGGGCTGTCTGCCTGGCGCTGCCTCCTGGGTCAGGGGCCGCGAGCCTGGGCTGTCTGCCTGGCGCTGCCTCCTGGGTCGGGGGCCGCGAGCCTGGGCTGTCTGCCTGGCGCTGCCTCCTGGGTCGGGGGCCGCGAGCCTGGGCTGTCTGCCTGGCGCTGCCTCCTGGGTCAGGGCCCCCAGCAAGCTCTCACTTTTCTACCTGACTGAGCGCGTCTCGGTTCTGCAGTTACAGACGAGGCGTTTTGAAAGGTCCTTGGCGTCGTGTCTTCCGCTGAGTAAAATTTAAGCAGGCCACAGCTCTCCCACTCACGTGTCGGTGGGTTAGGGTCCAGCCTTGCCACCTGCCATAGTGGCCCCTGCACCCAGGCACCTCGTCTTGCAGGGCCGGCTTTCTGTGAGATTGTGAGGCTTACTCCGGCTTGTAATGGAGAGAGTGGCACAGGGGAAGGCCGCGTCCCCCACTGCCTTACAGACTTAGAGCTGCTCCTGCTGCTTCAAGGCCTTGGTCGCTTGTCTGGAGAGCTAGCCGGGCCTGTCCGGTGGACCCCTGTCCTTGCGGACGGACGCACTCAGCTTCAGACCCCTGCGCTCTGGGCACTCGGTGGGAGACCATGCCCATCTGTCCCCTGGGAGGCGAGACTGGCATCACAGTGGGTGCTCTGATCTGGGAGAGCAGCAGGCAGATGTTTTCTGGAAGCCCTGAGAGGCGAGGGAGGGCGGGGCTAGGGCACACACACCTCGCCCTTCCTGTCTCCTCTCCAGCCTTCGGGTTAGCGCGAGGGGCCCGTGAAAGCTGTGGGCTGTTGTGACTGATCGGAGGCGGGCCTTGCTGCCTGGCAGGGGTTTGAGGCCCAGCCTATGGTGTCCAGGTCCCCTCTGCGTCCTCACTGCACCCTCCTCCCCGCATGTGCACGCGTGCAGACACGCGTGCAGGCCTATGTGCATGTGTTGAGCATCCGTGTGTTGTGCTCATGCCGGGTGGTCACAGCCTAGGGGAGCTGCTGGAGGGAGGAAAGCGCCCTGGGTATCCATGTGGAGTCCTTGCTGCTGGGTAACGGGGCTGGGCAAGCAGCAGGGTGGCCGTGCCCTGCCCTGCCCCGCTCAGGGCGCCCCGCCCCACTCAGGGTGCATCTCTGGGCCCCCGTGGTGGGGCCGGTGGTGCCCGAGTGCTGCCCCAGGGCCCCCAGTCAGCGGGTGCTGTTCCCTCGGTGGGGGTAGGGGGGCGCTCTTCAAGGGCAGCTGCACCTCGGAGTGAGCCATTCTCAGGGGTTTGCAGTCACAGTTTAAAAATCAGAAGTGCTCTTAAGTCCTTCCAAGGATCTTTCTGACCCAGCGGGCCCGGTCCCGCCCATCCTGCAGTGAGAGGCAGCAGCACTGGGCAGTCAGCTGGGATGGGTGCAGGGCCTCCACCCCTCTCAGGGGACACACAGTCACGGTTGGGGGAGGGTGTCACAGTCGGTGCTGGCTTGGTGTCCGTGGCTCAGTGCTTTTCGCTTCTGCTGAGCACGATTCCAGAGCCGGGAGAGCCTGCTTCAGCATTGGCGTTGACAGGATGGATTCCTGAGCGCACCAGAAAGCGTCAGCTGTCTTCTGCTGAACAACACCTCCTGAGTTGCTTCAGCCGATAGATCTCAATTCGCTCTACGGTAGGGAGTCCTGTAATCTTTTTGTCGTCACTGGTTTGGATCTCCTGATTGGAGTTTTTCCACAACCAAGGTGCCGTGATGAAAGCCTGGGGCTCTGGGTGTATTGACTGGAATCTTGTCGCATGCTAAGCAGCAGCTCATCTTGTTTTGTAACAGCACTGTGTGTGTGTGTTTCAG
Seq C2 exon
GCAAGTGTATCCTGAAGGTTACTATAATTCCAAAAGTGGATGGAGCAGTCAGAGTGATTACTATGCAGCTTACTATTCCGGCCAGTACGATTACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023933:ENSBTAT00000042743:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development