DreINT0135077 @ danRer10
Intron Retention
Gene
ENSDARG00000063300 | si:ch1073-385i9.2
Description
si:ch1073-385i9.2 [Source:ZFIN;Acc:ZDB-GENE-131127-512]
Coordinates
chr16:52081863-52082462:-
Coord C1 exon
chr16:52082329-52082462
Coord A exon
chr16:52081958-52082328
Coord C2 exon
chr16:52081863-52081957
Length
371 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GTTTTTTCCTCTAATCTTAGACA
3' ss Score
6.84
Exon sequences
Seq C1 exon
GATGATCCCTACCGTAGAGGCGATCCTCGATACGGATGGTATGATGGACAGAATCCTGGCTATCGGGAGGCTGAACGCCAACCAGAGAGGCCAAGCTCTAGAACCAGTCAATACTCTGACAGGCCCAGCTCAAG
Seq A exon
GTGAGGGCTTGTTCCACATTCACTCACTTTCTAATGATTTGAGATTTTTGTCAGATTTTTGTTTTTACACTTTGATTTCTTGGTTTGATTTGAGAGCAAATTTCTGTACTATTCCCCTGACGTTGCTGATTACATTGTTCTTATCACGAATGGAGAATTTAATCAGTCGATACCATCGCTATGCTTGCATACCAGTGCTTACTAGCTGTTTATCATAAGTAGGATTATTGATTTTCTGCAAAAACATTATATTCACAGAAAGGCTTTTTAATACAGCACTTGAACTGTATGCCATTTAGTGATTTTTGGTAGTGTGCACTTGTCTAAAATTACTCTGAAACCAATGTTTTAGTTTTTTCCTCTAATCTTAG
Seq C2 exon
ACAGGGGTATCAAGAAGACTTTTCAAGATCCAGCCGTAGTGCCTATGACGAATACTATGCAAACTACTATAAGAGACAATACGATGCCTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063300:ENSDART00000092348:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATCCCTACCGTAGAGGCG
R:
TCCATAGGCATCGTATTGTCTCT
Band lengths:
227-598
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]