GgaINT0126227 @ galGal4
Intron Retention
Gene
ENSGALG00000002364 | SEC16A
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr17:7855021-7857252:+
Coord C1 exon
chr17:7855021-7855163
Coord A exon
chr17:7855164-7857166
Coord C2 exon
chr17:7857167-7857252
Length
2003 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGC
5' ss Score
7.53
3' ss Seq
GCCTGTGCACTTTCTTTCAGACA
3' ss Score
9.44
Exon sequences
Seq C1 exon
GATAGCTATGGACAGTATGACCCACGGTACAGGTACTACGACAGCAGCAGCACTGCTTATATGGAGCCTGGGAGCTATCGGTATTCTGAGCCTGAACGTCCTAGTTCCAGAGCTAGTCACTGCTCTGATAGGCCCTCTTCTAG
Seq A exon
GTATGCAATTCCTAAATTGATTAAAGGTCTGGTATGTTCTAAAGCAGTGAGTGTAATTATGCCTCAGTTTTACAGCATAAGCTCCAGAGAGGAAGTTCAAAAACTCATTGTGTGTTGCCATAGGAAGGTATGATATCAAATGCCATGCCTGAAAAGGTACTGATAGGATTCCAGCAGTCTTTTCTGTTGCTGAAGCTCATTACTCCTTTCATTCAGCTCTCTAGCTGGTTATTAGCTTTCCTGCCAGGCAGAAAGTCACTGCAGCAGACTTGGTGCTGAAGTTAACTCCATGCATTTGTGCTGTGGAAGAGCAATGTGTGTAGGTCATGGGTTTGTTAATCAGTGCCAGTTGTTTTTTTTTTCTTGCTAGAGAGTAGTTCTCTAGTTCTGTTTATAAATGGCACTTTGGCAAACTGGTGTGGGCTTTGCTTGATAGGCATAGCAGCATGTGTGGCTCACTGAGGCAGGGATGAATGCAGTGAAAACGTACCTGGTGTTGTGTCAGGTTAATTTGTGTGATTGTTTCAGCTTTGTGGATGAGCTCGAGAGCTGTCATCTGTCTGGTTAGTTGTATGAAATAAGCAATTTCAGAGAGAAGCAGTGTTTAAATGCTGCTTGCAATTGAAATGTTTAGTATTTCTTGGAAAGCAACAAATTACCTCCGAGGGATTGCTGGCTCTTGATCATTATTGCACAGGTGATTTGTGTGAATTTCAAATTCATGATAAAATATTACTGTTGTATTATCTAGTGAGTGAGTTTGCAGGTCTCCAAGGGATCCCCTGAGAGCTCTTTCTGGAAATGATGAAACCTTCAGTGGTATTTGTCTGGTTTTGGTGGGTCACTCACAGGGCTGATTTCAAATTGAAAACAAAATTCTACTTATCCTAAGATTGTAGAAAGCTTTGGCACTGAGAAATACAAAATAAAAAAAGCATAACCACGTGTGATAACTTCTATCATTATCTGAAGTGAATCTAAGAGCATTGCAATGAGATAACATCTAGTAGCACTAAGGTACCACTCTTGCTGATTTGTGCTCTTCTTGAGTGCTATTTTTAAGAGGCTAAAATTACCATGAGGGCTTTGGGCAGATCAAAGCCTGTTACTTGTCAGTGTTGGTGTGATATGAGATGGATGCAGGCTGTAGTATGGCACTGCAGGACAGCAGAGACAAAGAGTGGCCATGTCGCACAAAGGTTGTGTGTCAGACTTTCCTGCAGTATATCAGTGATGCACTGATTTCCATAACAAATTGATGAAGCAGATTCTTAAATTCTGTTTGGTGAGGTTAAGGGAGTAACATCTTTCTGAGGAGGGCTGAGAAGATTGGTTGGGTGGATAAACCTGATCTGATAAGATCAAAACTCCTCTGCAAAGATGGGTGCTGTGCTAGCAAGCTTCCCACAGGTTTTTCTGGTGAAGACTCGTTTGGCCACTTGAGAGCTTGCACTGTAGTGTGAATCGAGTGTTGTAGAAGAGCGTGAAAGTTCCTGTCATTGCACACTGTTTTCAGATTCCTTCCTGTGCATATATATGCATACACACACTCACACACACAAGTGTTTGTGAATGTATACACATGTGAATGTTTATATGCACACGTATGTGTTTTCATATACATGCTTCCCTACATGAATGTATACATGCATATGTGTACAAACCTACCTGTACACACTACAGTTCTGTGTTTTTATCTGACATTGTTCTACTGGCTTTGTTTCAAGAAATGTGGGATAGTGTCTCAAAAATGGCATGCAGTAGAAGCTTTTAATGGCCACACGTTTCTTTTTCAATCAGAATTGGTATGACTCTTATAAAAGATAACTGCAGTATTTGTAGTTGCGTACTCAGTGATCTATTCTGTGTTTTTAGTCAGATTCCTGTGCTGCTTGTCTTCATTTGGTCAAACAGTAGTTCTTTAGTTCTTCATATCTTCTGATGACTTCAGAAGAATTTGGAGGAGGAATAATGACTTTTCTTGCCTGTGCACTTTCTTTCAG
Seq C2 exon
ACAAGGGTATCCTGAAGATTATTATGCAAAAACTGGATGGACTGATTATTATCCAGGCTATTACCCGAGCACATATGATTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002364:ENSGALT00000003726:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.646 A=NA C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]