BtaINT0131665 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000098 | SETDB1
Description
SET domain, bifurcated 1 [Source:HGNC Symbol;Acc:HGNC:10761]
Coordinates
chr3:19859534-19860041:-
Coord C1 exon
chr3:19859916-19860041
Coord A exon
chr3:19859736-19859915
Coord C2 exon
chr3:19859534-19859735
Length
180 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
CTCTTTTCCGTTTGACTCAGGGT
3' ss Score
8.9
Exon sequences
Seq C1 exon
GAACCTTGAGTCAGATGCCTGGAGAATTGAGCAAAGATGGTGACTTGGTCGTCAACATGCGCATCCTTGGCAAAAAAAGAACTAAGACGTGGCACAAAGGCACCCTTATTGCCATCCAGACAGTTG
Seq A exon
GTATGTTCAGGCTAGAGGGAGGGCTAATGCATAGCCCACAGGCCGCCGTCACTGATTGTGTCTTTTCCCCACAGCCTTTGGCTTTTGTCTCTCACATAGCAACCAGAACATAGCATCAGTGTCTCACACAGAAACTGATGGTTTTTAAAAATTTTTGTTTCTCTTTTCCGTTTGACTCAG
Seq C2 exon
GGTCAGGGAAGAAGTACAAGGTGAAATTTGACAACAAAGGAAAGAGTCTTCTGTCAGGAAACCACATTGCCTACGATTACCACCCTCCTGCTGACAAGTTGTATGTGGGCAGTCGAGTAGTGGCCAAATACAAAGATGGGAATCAGGTCTGGCTCTATGCTGGCATTGTAGCTGAGACACCAAACGTCAAAAACAAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000098:ENSBTAT00000000107:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=PU(19.4=55.8)
A:
NA
C2:
PF150571=DUF4537=FE(54.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCGCATCCTTGGCAAAAA
R:
GTCTCAGCTACAATGCCAGCA
Band lengths:
249-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]