DreINT0133546 @ danRer10
Intron Retention
Gene
ENSDARG00000099021 | setdb1b
Description
SET domain, bifurcated 1b [Source:ZFIN;Acc:ZDB-GENE-061013-224]
Coordinates
chr16:22103340-22104208:-
Coord C1 exon
chr16:22103914-22104208
Coord A exon
chr16:22103542-22103913
Coord C2 exon
chr16:22103340-22103541
Length
372 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TTATTAACTTTTTTAAACAGGCA
3' ss Score
9.27
Exon sequences
Seq C1 exon
CTTAAGGAGGCTTCAGCTGCCCTTCAAAGAACATCTCAGCAGGTGCAGAACCTGGCTCAGACTGTCAACAGAACGGCCCAATCAGGGGTCACTACACCAGTTAAAACAGGGGGCCCTCCCGGACAAGGTCCTCTAGCTGTTCCAGCAGTGTTTATGTCCTCAGCCCCAAGAAACACGCCCACTCAACCAAACCCTAATATAAAACAGGACAGTATCAAGATAAACATGACGCTTTTGGGTAAAAAACGAACCAAGACGTGGCATCGTGGAACACTTGTTGCCATCAAACAAGTGG
Seq A exon
GTAAGTCCATGCAGTTTGAAATCTGTTTAACTTTACTCTTAATTACATGGCCTTATTATCATTATTATAACCTTTATTTTAGTAGGAAAGACACATTGAGATTAAAAGTCTTTTACAATAGCGTCCTGGCCAAGATTAGGGAGTATACATCACATGGGTCTAACAAAAAAACAAACATAAAACAATAACAGTTAACATGAATCACACATTAACAATAACTATTCAAAACATCAACAAGCCTGTGTTTCAGTGTCTAAGTCATTTGTACTTTTTTTTTAAAAGCGTTTAGTGAAATCAATGGCCTGCTATGAGTGCTTCGGATGACAAAATATTTGTTATTTTGGTATCTTATTTATTAACTTTTTTAAACAG
Seq C2 exon
GCAACAATCTTAAGTACAAAGTCAGGTTTGAAAATAAGGGGAAGAGTCTTCTCTCTGGGAACCATGTGGCCTTTGAGTACCACCCAACACTAGAGAGACTGTTTGTTGGAGCCCGAGTTGTTGCCAGGTACAAGGATGGTAATCAAGTCTGGCTGTATGCAGGCGTAGTCGCTGAGATGCCCAACAGCAAGAACCGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099021:ENSDART00000165824:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.737 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=PU(17.6=21.2)
A:
NA
C2:
PF150571=DUF4537=FE(56.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACAGAACGGCCCAATCAG
R:
AACTCGGGCTCCAACAAACAG
Band lengths:
350-722
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]