GgaINT1003170 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9L3I9]
Coordinates
chr25:1734655-1735070:+
Coord C1 exon
chr25:1734655-1734776
Coord A exon
chr25:1734777-1734868
Coord C2 exon
chr25:1734869-1735070
Length
92 bp
Sequences
Splice sites
5' ss Seq
TCGGTAGGT
5' ss Score
9.09
3' ss Seq
TCTGCTGAAACATCTTCCAGGTG
3' ss Score
7.95
Exon sequences
Seq C1 exon
ACCTGCTGTGGGTGTGGGTGATCTCAGCAACGATGGCGATCTGAAGGTTGGCATGAGGATCCTGGGCAAGAAGAGAACCAAAACGTGGCACAAAGGAACTCTGATTGCCATCCAGACAGTCG
Seq A exon
GTAGGTTCTGGGTGTGGGTCAGTGGTGCTCAGCTCTTTCTGTATGGCATCACTGTGCCTTTATTGATCCTGCTCTGCTGAAACATCTTCCAG
Seq C2 exon
GTGCTGGTAAGAAGTACAAAGTGAAGTTTGACAATAAGGGGAAGAGTTTGCTTTCTGGCAATCACATTGCTTACGACTACCACCCCTCCCCAGACAAACACTACGTTGGGAGCAGAGTTGTGGCAAAATACAAAGATGGGGATCAAGTTTGGCTGTATGCTGGCATAGTGGCCGAAACCCCAAACGTGAAGAACAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024051:ENSGALT00000040574:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=PU(19.4=57.1)
A:
NA
C2:
PF150571=DUF4537=FE(54.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGGCAAGAAGAGAACCA
R:
ACTCTGCTCCCAACGTAGTGT
Band lengths:
181-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]