BtaINT0134624 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003491 | SLC25A23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:HGNC Symbol;Acc:HGNC:19375]
Coordinates
chr7:19238157-19239412:+
Coord C1 exon
chr7:19238157-19238268
Coord A exon
chr7:19238269-19239253
Coord C2 exon
chr7:19239254-19239412
Length
985 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
CCCAGCCTCTGCATCCCCAGGTC
3' ss Score
7.91
Exon sequences
Seq C1 exon
CATGGACCGTGATGGCACCATGACCATTGACTGGCAGGAGTGGCGTGACCACTTCCTGTTGCATTCGCTGGAGAACGTGGAAGATGTGCTGTATTTCTGGAAGCATTCCACG
Seq A exon
GTGAGGTGGGGGTGACGATCCCAGCCTGGTGGTTGGGACCTCTCTTTCCCAGGGCATAGGGGCTGGGGCTGGATCAGCACTCTAGTGGGAGGAACCACTGGGAGCAGCCTGAGGGTGAGGTTCTGCTCTCTGCTTCCTTCATCTGGGACTCTGGGGACTGATGGGAGCCCTTCAGACTTACTGCTGGGCTTTGGGGAGGTAGGCAAGAGAGGGCTCACCAGATGGGGCATCTGGTCTCCCACCCTCTACCCACGCAGCTCTCCTTCTGCTGGTTTCTAGTTCTGCCCAATAAAGAATTCTGCTGCTGAAAAGACAAGTTAGGAAGCCACTGTTTTTGGAGGGTCTGATGAGATCCATTAGAAATTGAGGGAAGAAGTGCTCTGGATTGTCATTTCTGGGGTCGGAATCCCTGAGTGATGCTTCTGATAGGATCTGATGGCATCTGGAGGGGATCCATCCTTGGGATCTGCTGAGAATCTCTTGAGAGATCCAGAGATTCCCACCCTGGGAGACCTATGAGGGGTTTGGTTAAGAAGTCCACAAGTGGAGATGCTAGAGGACAGATGATCTTTGTGGGGGACACCCCTGGGGATCAGGGGGAGACCCCAGGAGAGAGCCACTAGGCTCCTGATATGGGAAGCCCCTGGTAGGATCTTGTGTGGCCCTGCAGGAATCTTCTGGAATCCTTATGTAAGAGACCCTTGGGTAGAATCCTGCAGAGGGATTTCATTGGCTCTGGAGGGATCTTTATGGAGCAGAGGCTTGAATAGGAGGCTTTGATGGGATTTGGTGGAGGTCCCCAGGAAGGACGTTACCTTTCATGGAGACTGTGGGGCTAGGTCGGGTAGGGATCCGAGAGAGATCTCTTGGATTGGTGGACTCTCTGGGTATCCTGGAATTCATGGGGGAGACACCCCAGTTTAGAGCAGAGTCACCTCTCCCCAGCCCCAGTGGGTCATGACACCCCCAGCCTCTGCATCCCCAG
Seq C2 exon
GTCCTGGATATTGGTGAGTGCCTGACTGTCCCGGATGAGTTCTCGGAGCAGGAGAAGCTGACTGGCATGTGGTGGAAGCAGCTGGTGGCGGGTGCGGTGGCGGGGGCTGTGTCCCGAACAGGCACAGCCCCTCTGGACCGCCTCAAGGTCTTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003491:ENSBTAT00000004536:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(26.1=47.4)
A:
NA
C2:
PF0015322=Mito_carr=PU(35.6=60.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGACCGTGATGGCACCAT
R:
CTGCATGAAGACCTTGAGGCG
Band lengths:
270-1255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]