MmuINT0145566 @ mm10
Intron Retention
Gene
ENSMUSG00000046329 | Slc25a23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:MGI Symbol;Acc:MGI:1914222]
Coordinates
chr17:57053784-57055385:-
Coord C1 exon
chr17:57055274-57055385
Coord A exon
chr17:57053943-57055273
Coord C2 exon
chr17:57053784-57053942
Length
1331 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TCCACAGCCCCTGTTCTCAGGTC
3' ss Score
7.11
Exon sequences
Seq C1 exon
CATGGACCGCGATGGCACCATGACCATTGATTGGCAGGAATGGCGAGACCACTTTCTGTTGCACTCTCTGGAGAACGTGGAGGATGTCCTGTATTTCTGGAAGCATTCTACA
Seq A exon
GTAAGTTGGGAGCCACCTACAGGATAGGGGCTAGCTCCAGCTTCTCCCCAGGGCTCAGGAGTTCTGGGCCAAGACTCTAGAGGTGTTGTCAGCGTCTGAGTGGGGGGCGGTGCTCTTCCAATGAAGTTCTGTGCCTTTATTGTTCCATCTGGGGTTCAGGCGCCTGTTAACCACTGATGGACACTTCTGCTATCTGCTCAGAACCTTTTGGTCCTGCTTAGACTCCAGGGACAGCTCTAGTAGGAATCGTGGTTAGGGGGAAGAAAATACACAAAATGGCTTCCCACACTTGACCCACATAACTGCCAGATACCAGGTGCTCATCATCTGCTCCAAGGCTCCTGGGGCTGATGGAAAGATACAAACAGACACTGTATCTTAAAGATCGAAAGAGTCCATGGGCATGGGGAGGGAGGTCAGCTCTTGCACCAAGGTGGGAATCACTAAGGATCTTGTGGTGTCTGGCAGATCAATCTGTGGGATTGGACGTGGTCCTTGTCGTGTTTGCTTTTTCTGGGGAGATGTGAGTAAGCATCTATTTACTCCAGGTTAGGTAACAACAGACCAAAGTGAGGATCTCGCCAAGGTCCCACGTGGTGAGCCCGTGAGTTTCTTCAGCTTAATTGCAGAGCACAGTGAGGGGTCACTTACAGGACCTGGGGTACCCCAAACAGCTGCAGCACTGCTGAGTCCCACCCCATCCTGGATGGTGACCTGGTGGAACCTGCAGCATGGAATCTTTCTGTTGGCCTTCTGCTTCCTTGTTAGTGTTCTGGGATGGGACACTGAGTAGACTTCCGGGATACATCCTGGGTCCCCATCCCTCACACCCTAGGGGGTATCAAGAGTGCCATTACCATAGACCCAGTTATCACCAGATTGTTCTGCTCAGTTTGTTGCCATGGCTACCAGGCCACGGTAATAGCTGACTCAAAATGGCACGGGGTGATGATGTTCATGCTAGAGGAAAAAGCCATACTACAATCCTCTCGGGAGATCCAGAGATGTTCACCCCCAAAAGTCCACCATTGGGAAATCTATTGCTGGACTCTAGAAGGGAGTCTATCCCTTGGGGGGACTTCTAGGAGAGTACTTCTAGAGGAAGACTTTTTGGAGAAGGCTCTTGCGGGAGGATTTCTAAGGGAGGGCTCTCCATAGAGGAGTTGACTGTGAAAGCAGATCCTTTCGAAGGATTCAGTGGCTCTTTTGGTGGAATCAGTGGATCTTGTGGTGGGATCTGGTAGATTCTTCAGTAGGAGACTTCTGCAGTTAGGGCCCAGGCACATCCCCCGCCTCTGCTGGAACATGACATCCACAGCCCCTGTTCTCAG
Seq C2 exon
GTCCTGGACATCGGTGAATGCCTGACGGTGCCTGATGAGTTCTCCCAGGAAGAGAAACTTACAGGAATGTGGTGGAAACAGCTGGTGGCTGGTGCAGTGGCTGGCGCTGTGTCACGGACAGGCACAGCTCCTCTGGACCGACTCAAGGTATTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046329:ENSMUST00000040280:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.002
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(26.9=47.4)
A:
NA
C2:
PF0015322=Mito_carr=PU(34.4=60.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGACCGCGATGGCAC
R:
TGCATGAATACCTTGAGTCGGT
Band lengths:
270-1601
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types