RnoINT0136914 @ rn6
Intron Retention
Gene
ENSRNOG00000047781 | Slc25a23
Description
solute carrier family 25 member 23 [Source:RGD Symbol;Acc:1588586]
Coordinates
chr9:9991732-9994170:+
Coord C1 exon
chr9:9991732-9991843
Coord A exon
chr9:9991844-9994011
Coord C2 exon
chr9:9994012-9994170
Length
2168 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TGTGCAGCCCCCATCCTCAGGTC
3' ss Score
6.64
Exon sequences
Seq C1 exon
CATGGACCGTGATGGCACCATGACCATTGATTGGCAGGAATGGCGAGACCACTTTCTGCTGCACTCTCTGGAGAATGTGGAGGATGTCCTTTATTTCTGGAAGCATTCAACA
Seq A exon
GTAAGTTGGAGGCCACCTACAGGGCGGGGGCTAGCTCCAGGGTCTCCCCAGGACTCGGAAGTTCTGGGCCGAGACTCCAGAGTTGTTGTCGGTATCTGAGGCTCTCAGCTCTGAGCCTTTATTGCTCCAACTGGGGCTGGGAGCCTGATGACCACTGGTGGACAGTTCTGCTTAGAACCCTCTGGTCCTTCTTAGACTCCAGGGACAGCTAGTGGGAAGTGGGGTTACGGGGAAGAAAATATACCAAATGGTGTTCCCACACTTAGCCCACACAACTGCCAGCTGCCAGGTGCTTGTCACCTACTCCAAGGCTCCTGGGGCTGATGGAAGGATGCAGGCAGACACTGTGTCTAGAAGGTTCAAAGGAGTCCACAGGAAAGGAAAGGGAGGCCAGTTCCTGCACAGAGGTGGGAATCACTTAGGATCTTGTGGTGTCTGGAAGATTACTCTGTGGGACCTGACAGGGTTCCCGTTATGCTGGCTTTTTCTGGGGAGATGTCAATAGCATCTACTTACTCCAGCTTACGTAACAACAGACCAAAGTGAGGCTCTCACAAAGGTCCCACTTGGTGGGCCCATGAGTTTCTTCAGCGTAATTGCGGAGCACCGTGAGGGGTCACTTACAGGACCTGGGATACCCCAAACAGCTACAGCACTGCTGAGTCCCACCCCATTCATGGATGGTGACCTGGTAGAATCTGTACCATGGAGTCTTTCAATTGACCTTCTGCTTCCTTGTTAGTGTTTCCCAGGATTCCTTGCAGCTGGGGTGGGACAGTGAGCGGACTTCCAGGTTACATCCTGTGCCCCAACCCCTTTAGGGGGTGTCAAGAGCTCCATTACCATAGACCCAGTTATCACCAGATTGTTCTGCTCAGTTTGTTGCCATGGCTACCAGGCCAAGGTAATCACTGCCTAAAAATGGCACCGGGGGTGATGATGTCATGCTCAGAGAAAAAAAGCTATACTATAATCCTCTCGGGAGATCCAGAGACGTCCACTCCCCAAAAATGCACCATTGGGAAATCTATTGCTGGGCCTAGGACAGAGTACATCCCTCGGGGAGGACTCTGAGGAGAAGACTTACAGAGGAAGACACTCTAGGAAAGACACCTGGGGGAAGACTCTTGGGGAAGGATTTCTAAGGGAGGGCTCTCCATGGAGGAGATGACTGTGAAAGCAGATTCTTTTGAAGGATTCAGTGGCTCTTTTGGTGGAATCAGTGGATCTTATGGTGAGATCTGGTAGATTCTTCAGTAGGATTCAGTAGATTCTTTGGTAGGACTCAGTGGATCTTTTGGTAAGAATTGGTGACTCTTTGGTGAGATCAGGTGATTCGCTGGTGAAATCCAGTAGCCCATTTCTTAAGTTTCAGTGGATTCTTTCTTTAGGGGTGGTGTTGAGACAGGGTCTCTCTGTGTAACCATGGGTGTCCTGGAACTCACTCTGTAGTCCAGGCTGGCCTCAAACTCACAGAGATCCGCCTGCCTCTGCCTCCCAGTGCTAGAACTAAAGATGTGCGCCACCACCGCCCAGCTCAGTGGATTCTTAGTTTGTGCAGAGAGGCACAGGTAGAGGTCAAAGGACAACTTGGGGAAACATCTCTCTTTGCATCTTATGCATTATGGATGTTGAACTCAGACCTCCAGGCTTAGTTGAACACATCTATGGAGCCCTCACAAGGCCCTCAGTGTACTCCTGTGGGAGTCTATGGTTCCTTTGGTGGAATTCAGTGGACTGAATTATTTGGAGAACTCAATGGATCCTTTAGAGTAACAGTTCTCAACCTGTGAGTTGTGGCCTCTTTGGAGTTCGAAGGACCCACTCATAGAGATTGCATATCAGGTGTTTATATTACAATTCATAACAGTAACAGAAAATAATTTTATGATAGGATCAGTACAACATGAGGAACTGTATTAAATGGTCAAGCATTGGGAAGGTTGAGGACGACTGCTTTAGTAGATCCTGCAGAGGAATCCTGGCATCTCACTGACAGTTTTAGTGGCACGTGGTAGGATCCAGAAGGGATCTGCTGGGCTCTTGAAGCAACATCCTTTGGCGGGCTCTGGGATGTTCTAGAATTCATAGAGGAGACTTCTCCACTTAGGACCCAGGTACATCCCCCACCTCTGCTGGAGCCTGACATGTGCAGCCCCCATCCTCAG
Seq C2 exon
GTCCTGGACATTGGTGAATGCCTAACGGTGCCTGATGAGTTCTCCAAGCAAGAGAAACTTACAGGCATGTGGTGGAAGCAACTGGTGGCCGGTGCAGTGGCTGGCGCTGTGTCACGGACAGGCACAGCTCCTCTGGACCGACTCAAGGTATTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047781:ENSRNOT00000073000:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(40.0=84.2)
A:
NA
C2:
PF0015322=Mito_carr=PU(34.4=60.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]