HsaINT0151738 @ hg38
Intron Retention
Gene
ENSG00000125648 | SLC25A23
Description
solute carrier family 25 member 23 [Source:HGNC Symbol;Acc:HGNC:19375]
Coordinates
chr19:6454559-6456531:-
Coord C1 exon
chr19:6456420-6456531
Coord A exon
chr19:6454718-6456419
Coord C2 exon
chr19:6454559-6454717
Length
1702 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
CCCAACACCTGTATCTTTAGGTC
3' ss Score
7.72
Exon sequences
Seq C1 exon
CATGGACCGAGACGGCACAATGACCATTGACTGGCAAGAATGGCGCGACCACTTCCTGTTGCATTCGCTGGAAAATGTGGAGGACGTGCTGTATTTCTGGAAGCATTCCACG
Seq A exon
GTGAGGTGGGGGTGGCTTTCCCCAGCTGAAGGCTGTGCCCTCTTCCCCAGGGGGGCCTTGCTCCGATCTCCCCAGGGCTTGGATGGGCTGGACCAGGACTTTCCAGAAGGAGAAGGCACTGGCAGCAGCTGACGGATGAGGGTCTGTTCCTCTCTTCCTCCACTTAGGGTTCAAGGGTCCCATTTGGGACATCTCTGCTGTCTGATTGAAGCGCAGCCCTTGAGACTTACATCGGGGCCTCTGGGGACAGCGTGTGGGGGTTGCGGGTACAGGGAAGAAAGAGCTCACCAGATGGGGTACAAGGCCTCCCACCTTCCACCCACACAGCTCTCTTCTGCTGGGTTCTCTGCCTGGATAAAAGATTCTACGGCTGAACAGAATCGTTCAAAAACCACGGTCTTGGCCAGGCGCAGTGGCTCACACCTAAAATCCCAGCACTTTGGGAGGCCGAAGTGGGCGGATCACGAGGTCAGGCGATCGCGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACAAAAATATTAAAAAAATGAGCCAGGTGTAGTGGCAGGCACCTGTAGTCCCAGCTACTAGGAAGGCTAAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCTAGCCTGGGTGACAGAGCCACACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAACACGGTCTTCAGAGGATCCAATGGGAGCCACTAGAGAGGGTAGTGGGGGTTTGCTCTAGATCCCTAGTTCCTGGGTGAAATGTCTATGAGCAATGTGTCTGGTAGGATCTGATGGCATCTGGAGGGGGATCCGTCTGTGGGATCTGGTGAGAACCTCTTTGGAGATCCAGAGACTCCCACCCCAGACGATTCATGGGGACCTTGGTTAGAAATTCTAGACTGGAAATGATTCCTGCACGGGGACTCCATGTGGAGGAGATCCCTGTGAGATTTCGTGGGTCCCTGAGAAGGATCTGCTGGGGTCTTTATAGGGGAGGTGCCTGGTAAGATCTTGTATGGCCCTGAAGGGATCTTTTGGAATCATTATATGGAAAACCCTTGAGTGGGATCCTTCAGTAGAATCTCATTTGCCCTGAGGGATCTTTTTTTGCTGTTACAGACAAGGTCTTACTCTGTTTCCCAGGCTGAAATGCAGTGGTGTGATCATAGCTCAATGTAGCCTCAAACTCCTGGGCTCAAGCAATCCTCCCATCTTGGCCTCCTGAGTAGCTGGGACTACAGGCACATGCCCGGCCAATTTTTGTAGAGAGGGGATCTTGCTATGTTGCCCAGGCTGGTCTTGAACTCCTGGCCCCAAGGGATTCTCCCACTTGGGCCTCCCAAAGTGCTGGGACTACAGATGTGAGGCATCACATCTAGCCTGGAGGGATCTTTATGTGGCAGATACTTGAATAGGATCCTTTAGTGGGATTTGGCAGATCCTTTGGTGGGATTTAGTAGGATATTGGGATCTTCTAAGGAGGCTGCTAGGTTAGATGCTTTGGTGACACCTGGTAGGACCCAACAGGACTCTTCTGGGGTCTCCAAGCAAGAGTCATTGGCAGACTCTAGGGTATCCTAGGATTCATAGAGGAGACTCCCCTATTTAGGACTGAGTCACATCTCCCTGTCCCCACCATGGCATGACACCCCCAACACCTGTATCTTTAG
Seq C2 exon
GTCCTGGACATTGGCGAGTGCCTGACAGTGCCGGACGAGTTCTCAAAGCAAGAGAAGCTGACGGGCATGTGGTGGAAACAGCTGGTGGCCGGCGCAGTGGCAGGTGCCGTGTCACGGACAGGCACGGCCCCTCTGGACCGCCTCAAGGTCTTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125648:ENST00000301454:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(26.1=47.4)
A:
NA
C2:
PF0015322=Mito_carr=PU(34.4=60.4)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGACGGCACAATGACCATT
R:
CTGCATGAAGACCTTGAGGCG
Band lengths:
264-1966
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains