DreINT0149976 @ danRer10
Intron Retention
Gene
ENSDARG00000005690 | slc25a23a
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23a [Source:ZFIN;Acc:ZDB-GENE-121214-154]
Coordinates
chr1:54307621-54309367:-
Coord C1 exon
chr1:54309256-54309367
Coord A exon
chr1:54307780-54309255
Coord C2 exon
chr1:54307621-54307779
Length
1476 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGA
5' ss Score
5.27
3' ss Seq
ACAGCCTTGGTGTGGTGCAGATG
3' ss Score
5.7
Exon sequences
Seq C1 exon
TATGGATAAAGATCATTCCATGACTATTGACTGGATCGAGTGGCGAGATCACTTCCTGTTCAACCCTCTACACAACATGGAGGAAATCGCTCAGTTCTGGAAGCACTCAGTG
Seq A exon
GTATGAGGAGCTTTGTATGGCTGTAACATGAGCGTCTGTATTTATTGACAAATAGCGGTGCTGTGTGTGTGATTTCAGTAAACAAAAATGAAAACCAAAACTATTGGTCAAAATACAGATTCTTTAATAGACTTAAAATTAAATAAAAACTATTTTAAGTAAATATTCTTTTTGTAATAAATAAAAAAACTAAAACGAATGAAACTAACAACAGTAACACGACAAAAATGCTTTTCTTACTTTGTGTTTTGTCGTGTGACTATTTATAGAAGTACCAGTGGATGGCGCTTTTACAGCCGAACGTACACAATAATATTTTTATATATACAAAACCACTAGCTGCGTCCCAAGTGGCACTCTATACACTATGCACTTATGCGCTATGTACTTATGCACTTACACACTCAACAGTATGGTATATGAATGTAGCGTTGTCCCAAATGGAGCACTGTTTTTTTAATAAGCAGAAATTCAAACCCTTTCCCTGATGATGTTTTACAGTTGCCAAATTTGTGAAATAAATGCCCAAACTACCAAATAACACCTGCATGAGTATAACCGCATTCACCATCGGGAGGTGGTATAATCACTCTCATAGGAGAATATCCAAGTTATCCAACATGTGCGCCCGATAGCCCCGCCCCTTCTTCTATGTGAGTAAAGCAGCGCCTGTTGAGTGCATGAAGTGTCCAACATTACACACTTTGTACTAATTAATTAATGATAATTAAAGTGCACTTATTATTTTGGATTTTTCTGTGTGAACACACTACTTACACTATTTATACTATAAAAGGCAGTAGAATAGTGCATAAGTATGCACGTTGGGATGCACCTATTAATTGCTTGATTTAGGATATATTTCTAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATACATCTATGTGTTTTTTTTCTTACTTTTCGTTTGTTTTTTATTATTATTACTACTTCATTATTATCTTTATTATGGTGCTGTCACATGATTAAAAATAATTAATTGCCTTTAAAATAAAAGTTTGTATTTACATAGTGTAGGTGTGTATAATTATAATTAAATATATAAAATACAAAAAACATACAAAACTAAAAAGATTACATACATATATTAATTTATTTGAAATTTATATCTGTAAATTCAATGTTCATTTTGGATGTGATTAATTTTTTGACAGCACTACTATATTTATTACATTTACATTTTGTTATTATTATTATATTCTTCCCAGTTTCCTTTAGTTTATGGGTGGAGGGAGGGAAATTGGGATGTGTGCATATATGTTTGTTATATACTGTGTAGCAGGTAGTAATATACGAATTGAAAAATTACAAAATATTTTATTAACATAAACATTTTTGAAACAAACTAAAACTACCCTGAAATTTACAGAAAATGTAAAAATAGTATGGAAATAAAAGCTTGTTTAAATTGTAAAGCTAAAACAGCCTTGGTGTGGTGCAG
Seq C2 exon
ATGCTGGACATCGGGGAGCACCTGACGGTTCCAGACGAGTTCTCAGAGAAGGAGAAGCGATCCGGGTTCGTGTGGCGGCAGCTGATGGCAGGAGCCGTGGCAGGATCAGTGTCCCGGACAGGAACCGCACCGCTCGACAGACTCAAGGTCTTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005690:ENSDART00000152666:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(28.6=47.4)
A:
NA
C2:
PF0015322=Mito_carr=PU(35.1=62.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCATTCCATGACTATTGACTGGA
R:
CTGCAGGAAGACCTTGAGTC
Band lengths:
262-1738
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]