BtaINT0141647 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005356 | ST5
Description
Bos taurus suppression of tumorigenicity 5 (ST5), mRNA. [Source:RefSeq mRNA;Acc:NM_001098093]
Coordinates
chr15:44446321-44447061:+
Coord C1 exon
chr15:44446321-44446398
Coord A exon
chr15:44446399-44446920
Coord C2 exon
chr15:44446921-44447061
Length
522 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GCTGCTGCCGGTGGGCACAGGTC
3' ss Score
3.88
Exon sequences
Seq C1 exon
CCAAGCGGGAAAGGGCCTCGGTTGCCAGAGGTGTACTGTGTCATCAGCCGCCTTGGCTGCTTCGGCCTGTTTTCCAAG
Seq A exon
GTAAGAGGGCTCTGGCTTACTTCCTGCCCCCTTCCCCCATCTGAAAGCTCCCACAGGAGTATCTACAGGCGGTTTAGATGAGAAAACCACATGTGTGTGTGAGAGAGAGGGTGAGAGAAGGCGAGAATGCAAGGGCAAGTGCAGCCAGGCTGTCTGACTCCCTCCCTGTCCACCAGCTCCTACACGGCAGCGTCTGCTCGTGTCACATCCCACCCTGGGCCGTGGGCAAGCTGAGTCCTTGGGCACAGAGACCCTGGGGAAGCCAAGTGCCCAGGAACTCCACTCTCAAGAGGTGTTTCCTTTGCCCAGCTATTCACTCTTGGGGTCTGAAGCAAGAAATAGTTAGGGAACACAGCCCTCACAGTGGCCAGGGACTTGGGAAGGGTGGGGTGTGAAGCTCTTGGCTCCCAGCTTTTGGCCCAGACCAGTCAGATGCCAGAGTGCCCTCTTCTCTACCCAGGAGGTAGGGGAAGGGCAGGGCCCTGACCGCCTTCCTCTTTGGGCTGCTGCCGGTGGGCACAG
Seq C2 exon
GTCCTCGATGAGGTGGAGCGCCGGCGTGGGATCTCCGCTGCTCTGGTCTATCCCTTCATGAGAAGTCTCATGGAATCACCCTTCCCCGCCCCAGGGAAGACCATCAAAGTGAAGACCTTCCTGCCAGGGGCTGGCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005356:ENSBTAT00000007048:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PU(10.3=73.1)
A:
NA
C2:
PF0214116=DENN=FE(24.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCGGGAAAGGGCCTC
R:
CCCTGGCAGGAAGGTCTTCA
Band lengths:
206-728
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development