GgaINT0058380 @ galGal4
Intron Retention
Gene
ENSGALG00000005927 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:HGNC:11350]
Coordinates
chr5:9148198-9151924:+
Coord C1 exon
chr5:9148198-9148275
Coord A exon
chr5:9148276-9151783
Coord C2 exon
chr5:9151784-9151924
Length
3508 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ATGTCTTACTAATGGATTAGATC
3' ss Score
3.62
Exon sequences
Seq C1 exon
CCAAGTGGAAAAGGGCCGCGCCTACCTGAAGTCTATTGTGTCATCAGCCGCCTGGGGTGCTTTGACTTATTCTCTAAG
Seq A exon
GTAAGAGGATCTTTTTACAATGTTGTTTTCGAACTTGAATGTTTACTGAGAAATATGCACATCAATGAACCAAGCAAGAAGAATTTCTTCCTTTGATGGGGGATAACTGTATTCTGTAGTTACTGTTTTGGATATTCCATCTGTGTGACTGGGTTCATCAAAGAATGTCTTATGACTTCGGTGACCGAGGCAGAACTTGATTCAAAAGACATCTGGGTGTCTGTATCATCTGGCTGACTGAGGTTTTTCCATTGTTTTCCAAAGCCATTCTGTGCTGAGCTGTAACTCTTGGCATCTACAGTTCAAATGATGGGCCAATGCCACTTTTACTCCAGCACCCTGTGGAATAATGAGTCTGAGAAGAAAGAGTATTTGATAAGTGAAGCCTATATGCTTAATAACATTGACATGATGTTTTTATTCTAAGAGACTAGGGAAGGATGTATAATCTTTTAATAAGCCTTTACATTAACAAATCCAAAGTTAGATCATATGCTGATGTAATTTACCTAGGTAATAAATTTCTTGATGTAAGAGTATTAAGGCAATATGCAGAACATTGCAGCTAAACAGGGATTGCATCGCCACTGAAGCAGTTAACTGCTAGCCAGCTCCAGGGCTACAAGCAGTATTCTTTTTTAAGACAAAAGGTTATTAAAATAAGCTATTTAAAACATTACTGATTGGTTAATGTTTGAAACATCTCTTTGGCTGCCAGTTTAGGACCTCCAGTCCTCTGGAAGAGTCCTACAAAATCCAGTGAGCTCCTCAAGAGTACCCCACAGGATTTGCCAGCAGTGTGTGGAGAAGGATGATATATCTGATGCCAGATGGTTGTCTTCCCCCATTCAAATTTTGATACAGTATTCATAGGAATGTTTTAATTCGCCAGAGATTTTCACTTCAGATACAAAGAACCTGACAGGACTTAAACATGAATTTTGCTTGTTCATTTGTATAGGAATAAAGTTGAAACAAGCACATTAACTATTGAAATTAATAAAAATATTGCTCATAGGATCTAGTAATCACATGGAACCTTAACTTTCGTCAGAACAGCCTTTATAGAACTTACTTTAACACGAATCTTGTGTGAGGAAAACCGATGTTGTTGAAATAGTTAACTGCAGTCCTGCTTCTGAGGTCTTCCATAGAGCTCTGCATCTGAGGGTTTATAACAGCGACCCTTAGACATAATACATATCTAAACACACATATCTGTGAGCAAAATGGAATGCATTATTCCATAACGGGAGGATAACACAGCTCAAAAAAATAACTGCCTTGGAAGCTGTGGAGAGAGGTCCTGGGGCTCTTTGTTTGCTTTTATGTTTTTATCTAATTTTGATAATGCACCAATTTTCAAAGGAAACCTTGGGAAAAACGCAAATGTGAGTATCCTACTTACACCAAATATCTCTGCAGCCAGGATATAAAGTCTGCAGCAGGCAGGAATGATCAAACCGAAATTGCAAATAGACTGCTTTCCCGGTTAAATCTGTAATCTGAACATGTCTGTTCATCCAGTCAGAGTCAACTGGGGGCTGACTGGTAGGTGTGATTCCACTGGTTTTAGCAGGAGCAGATCCCAGCTGACCTGGCAGGCTGGCCCTCAAATTCTTGATCTGTGAGCAGAAGGGAAGGCTCCCACTGAGTTACGTATGAGTCCGTGAGTGGGGGGCTGTAGAACACCCATGCTTTTCTTTAAGTTATGGGCTCGGGGAGGGGCTGGGCCACAAAAAGGCCTAATTCCCACTGGATCTGTACTGTGCTGCTAAGGGCTGATCACCTCCTGAAAATACAGGCGCCACAATGAGAGCAGGGTGCTTGGAAAGACCTGGCGCAGACTCCAGCTCTGGGCTGGATTTAGCACAGATTTTAAGCACAAACTCCAAGCAACGCGGCTGGAAAGGTTTTGGATGAAACAGCTTCTAAAGGAAGGAGGAAGAGTTCAAGTCTCAGCTTCTTCATTGTTTTTGGAGACAGATGTGGATGGAGGCAGTTCTTGAAAACTGAATCAGTCTCTTTCTTCAGAGGGAAACCTGGGCTGTCCTAATGGCACAATTCAGTGATGGTGCCCTCTGCAATGTTAGTCAAAACAAGGAACAGTAATCGTACAGAAAAAATGTGACTGATGAAAGACCACAAGATACTGAACCTTGGTATTATTTATCAGGGAAGCAAAATGAGTTCTTTGTTTTAAAATATTTATCATGCTGGTTTGGATAACTTGCATTATTTTCATCTTCCTTGAATCCTTTTATGTTCACTGCTATGATACCTACTGCTAAGATAGACTTGAGAAGCATGGATGTCTTTACTTCCAGACCTAGTCGGTTATAAGCTAGTGGTTATCTGCCACTTCTGCAGACAAGGATTACAGCTTTGCTTTATAGTTCAGTCTTCAGTGTGCAGCGAAGAGGAAGGAGAAACTATGTACCAGTGAATGCTTCTGTTGGCATTTGGTGTCATTAGCTATCGTTGTAAGTCACCAGCTTGTGATTAAATATATTTTAATGTTCTGTTTCAGTGAAAAAAGCATTTCCAAGAGAAACAAGGGAAAATGCCTGGCTCAGATCCACTAACACATGCATAGCCTTTTGGTCTCGAGTGGTGGTTAGGAGATCAGCCTTTCAGGTCAAACCACTAACTGCTTTGAAGCTTGCTTTCTTGTCTTCTTTAGGTTTATCATCTATATGGTCTGTCTAATGTGGGAAAGCTTAGCTGTGATCTAAATTATGCTGTTCCATGTGACCAAAAGGAGAAGAAAATAATGGTCCTTTCTATCTGTGAGAAGTTCCATCTGCTCATTTCAGAACTGGATTGCCAGCCCAGCATCAAGTTAAACAGAAAACGACCTCAGTGCAGGCAGCCAGTGTAAACAGCTGGGCATGCTTCATGAAGCTGCTCACAGCTGGCTCCAGCTTGGCGCAGACTGCAAAGTGACTGCTGTCATCGTGGCTGAGGCCTGGACCTACAGCTCTCTCCTGGTGGAGCCCTGATGGCATCATAGCATGTTGGGGGTGCTTTTCTTGCCAGTCTGGCTTTTTCCTGCCCAATCGTTCACAGTGGAAAAAAATGAGCTCCCTAATGCAAATCTCAGGCTCACAACTGAGATTTGACACTCACTTAGCCTGTGATTGTGGGGTTTGTGTTGATCTTTCCCTTCTTCAGCTCACGCTGTTGTTCGGGTCAAATCCCAACAATATAGGTCCCATTTTGCCATGCCTGAACTTCCTTCAGCTTTGCAGGTTTGTTGTTTCTTCCTTGTCTCTTTGTTTAACTGCATGCATGGAAGGAGTTCATATTGTAACTGGAAGATGAGTCACTCTTACTGTAGGATCAAATACTGTGGTTTTAATGGCATTGCAGAAATGTATGGAAAAGGAAAGTTAAACTTAGATCTGCTGTGTGTTTAGGCATATGTGGGTCAGAAGATGTTTCAGAAGCGTATGTGGTGCTGACCTGTTCTCTCTCTTTTCTCCCTTATGTCTTACTAATGGATTAG
Seq C2 exon
ATCCTGGATGAAGTTGAGAGGAGAAGGGGCATATCTGCTGCTTTGGTTTATCCATTTATGAGGAGTTTGATGGAATCTCCTTTTCCTGCACCTGGAAAGACAATCAAAGTCAAAACCTTTCTGCCTGGAGCTGGCAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005927:ENSGALT00000009535:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PU(10.3=73.1)
A:
NA
C2:
PF0214116=DENN=FE(24.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]