GgaINT0058380 @ galGal3
Intron Retention
Gene
ENSGALG00000005927 | ST5
Description
NA
Coordinates
chr5:10675412-10679998:+
Coord C1 exon
chr5:10675412-10675489
Coord A exon
chr5:10675490-10679857
Coord C2 exon
chr5:10679858-10679998
Length
4368 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ATGTCTTACTAATGGATTAGATC
3' ss Score
3.62
Exon sequences
Seq C1 exon
CCAAGTGGAAAAGGGCCGCGCCTACCTGAAGTCTATTGTGTCATCAGCCGCCTGGGGTGCTTTGACTTATTCTCTAAG
Seq A exon
GTAAGAGGATCTTTTTACAATGTTGTTTTCGAACTTGAATGTTTACTGAGAAATATGCACATCAATGAACCAAGCAAGAAGAATTTCTTCCTTTGATGGGGGATAACTGTATTCTGTAGTTACTGTTTTGGATATTCCATCTGTGTGACTGGGTTCATCAAAGAATGTCTTATGACTTCGGTGACCGAGGCAGAACTTGATTCAAAAGACATCTGGGTGTCTGTATCATCTGGCTGACTGAGGTTTTTCCATTGTTTTCCAAAGCCATTCTGTGCTGAGCTGTAACTCTTGGCATCTACAGTTCAAATGATGGGCCAATGCCACTTTTACTCCAGCACCCTGTGGAATAATGAGTCTGAGAAGAAAGAGTATTTGATAAGTGAAGCCTATATGCTTAATAACATTGACATGATGTTTTTATTCTAAGAGACTAGGGAAGGATGTATAATCTTTTAATAAGCCTTTACATTAACAAATCCAAAGTTAGATCATATGCTGATGTAATTTACCTAGGTAATAAATTTCTTGATGTAAGAGTATTAAGGCAATATGCAGAACATTGCAGCTAAACAGGGATTGCATCGCCACTGAAGCAGTTAACTGCTAGCCAGCTCCAGGGCTACAAGCAGTATTCTTTTTTAAGACAAAAGGTTATTAAAATAAGCTATTTAAAACATTACTGATTGGTTAATGTTTGAAACATCTCTTTGGCTGCCAGTTTAGGACCTCCAGTCCTCTGGAAGAGTCCTACAAAATCCAGTGAGCTCCTCAAGAGTACCCCACAGGATTTGCCAGCAGTGTGTGGAGAAGGATGATATATCTGATGCCAGATGGTTGTCTTCCCCCATTCAAATTTTGATACAGTATTCATAGGAATGTTTTAATTCGCCAGAGATTTTCACTTCAGATACAAAGAACCTGACAGGACTTAAACATGAATTTTGCTTGTTCATTTGTATAGGAATAAAGTTGAAACAAGCACATTAACTATTGAAATTAATAAAAATATTGCTCATAGGATCTAGTAATCACATGGAACCTTAACTTTCGTCAGAACAGCCTTTATAGAACTTACTTTAACACGAATCTTGTGTGAGGAAAACCGATGTTGTTGAAATAGTTAACTGCAGTCCTGCTTCTGAGGTCTTCCATAGAGCTCTGCATCTGAGGGTTTATAACAGCGACCCTTAGACATAATACATATCTAAACACACATATCTGTGAGCAAAATGGAATGCATTATTCCATAACGGGAGGATAACACAGCTCAAAAAAATAACTGCCTTGGAAGCTGTGGAGAGAGGTCCTGGGGCTCTTTGTTTGCTTTTATGTTTTTATCTAATTTTGATAATGCACCAATTTTCAAAGGAAACCTTGGGAAAAACGCAAATGTGAGTATCCTACTTACACCAAATATCTCTGCAGCCAGGATATAAAGTCTGCAGCAGGCAGGAATGATCAAACCGAAATTGCAAATAGACTGCTTTCCCGGTTAAATCTGTAATCTGAACATGTCTGTTCATCCAGTCAGAGTCAACTGGGGGCTGACTGGTAGGTGTGATTCCACTGGTTTTAGCAGGAGCAGATCCCAGCTGACCTGGCAGGCTGGCCCTCAAATTCTTGATCTGTGAGCAGAAGGGAAGGCTCCCACTGAGTTACGTATGAGTCCGTGAGTGGGGGGCTGTAGAACACCCATGCTTTTCTTTAAGTTATGGGCTCGGGGAGGGGCTGGGCCACAAAAAGGCCTAATTCCCACTGGATCTGTACTGTGCTGCTAAGGGCTGATCACCTCCTGAAAATACAGGCGCCACAATGAGAGCAGGGTGCTTGGAAAGACCTGGCGCAGACTCCAGCTCTGGGCTGGATTTAGCACAGATTTTAAGCACAAACTCCAAGCAACGCGGCTGGAAAGGTTTTGGATGAAACAGCTTCTAAAGGAAGGAGGAAGAGTTCAAGTCTCAGCTTCTTCATTGTTTTTGGAGACAGATGTGGATGGAGGCAGTTCTTGAAAACTGAATCAGTCTCTTTCTTCAGAGGGAAACCTGGGCTGTCCTAATGGCACAATTCAGTGATGGTGCCCTCTGCAATGTTAGTCAAAACAAGGAACAGTAATCGTACAGAAAAAATGTGACTGATGAAAGACCACAAGATACTGAACCTTGGTATTATTTATCAGGGAAGCAAAATGAGTTCTTTGTTTTAAAATATTTATCATGCTGGTTTGGATAACTTGCATTATTTTCATCTTCCTTGAATCCTTTTATGTTCACTGCTATGATACCTACTGCTAAGATAGACTTGAGAAGCATGGATGTCTTTACTTCCAGACCTAGTCGGTTATAAGCTAGTGGTTATCTGCCACTTCTGCAGACAAGGATTACAGCTTTGCTTTATAGTTCAGTCTTCAGTGTGCAGCGAAGAGGAAGGAGAAACTATGTACCAGTGAATGCTTCTGTTGGCATTTGGTGTCATTAGCTATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATTTTAATGTTCTGTTTCAGTGAAAAAAGCATCCCCCTATAGAAACAAGGGAAAATGCCTGGCTCAGATCCACTACCTTTTGCATAGCCTTTTGGTCTCGAGTGGTGGTTAGGAGATCAGCCTTTCAGGTCAAACCACTAACTGCTTTGAAGCTTGCTTTCTTGTCTTCTTTAGGTTTATCATCTATATGGTCTGTCTAATGTGGGAAAGCTTAGCTGTGATCTAAATTATGCTGTTCCATGTGACCAAAAGGAGAAGAAAATAATGGTCCTTTCTATCTGTGAGAAGTTCCATCTGCTCATTTCAGAACTGGATTGCCAGCCCAGCATCAAGTTAAACAGAAAACGACCTCAGTGCAGGCAGCCAGTGTAAACAGCTGGGCATGCTTCATGAAGCTGCTCACAGCTGGCTCCAGCTTGGCGCAGACTGCAAAGTGACTGCTGTCATCGTGGCTGAGGCCTGGACCTACAGCTCTCTCCTGGTGGAGCCCTGATGGCATCATAGCATGTTGGGGGTGCTTTTCTTGCCAGTCTGGCTTTTTCCTGCCCAATCGTTCACAGTGGAAAAAAATGAGCTCCCTAATGCAAATCTCAGGCTCACAACTGAGATTTGACACTCACTTAGCCTGTGATTGTGGGGTTTGTGTTGATCTTTCCCTTCTTCAGCTCACGCTGTTGTTCGGGTCAAATCCCAACAATATAGGTCCCATTTTGCCATGCCTGAACTTCCTTCAGCTTTGCAGGTTTGTTGTTTCTTCCTTGTCTCTTTGTTTAACTGCATGCATGGAAGGAGTTCATATTGTAACTGGAAGATGAGTCACTCTTACTGTAGGATCAAATACTGTGGTTTTAATGGCATTGCAGAAATGTATGGAAAAGGAAAGTTAAACTTAGATCTGCTGTGTGTTTAGGCATATGTGGGTCAGAAGATGTTTCAGAAGCGTATGTGGTGCTGACCTGTTCTCTCTCTTTTCTCCCTTATGTCTTACTAATGGATTAG
Seq C2 exon
ATCCTGGATGAAGTTGAGAGGAGAAGGGGCATATCTGCTGCTTTGGTTTATCCATTTATGAGGAGTTTGATGGAATCTCCTTTTCCTGCACCTGGAAAGACAATCAAAGTCAAAACCTTTCTGCCTGGAGCTGGCAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005927:ENSGALT00000009535:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PU(10.3=73.1)
A:
NA
C2:
PF0214116=DENN=FE(24.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]