HsaINT0159814 @ hg38
Intron Retention
Gene
ENSG00000166444 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:HGNC:11350]
Coordinates
chr11:8707085-8707854:-
Coord C1 exon
chr11:8707777-8707854
Coord A exon
chr11:8707226-8707776
Coord C2 exon
chr11:8707085-8707225
Length
551 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GCTGCTGGCGGTGGGCACAGGTC
3' ss Score
2.59
Exon sequences
Seq C1 exon
CCAAGTGGGAAAGGGCCCCGGTTGCCAGAGGTGTACTGTGTCATCAGCCGCCTTGGCTGCTTCGGCTTGTTTTCCAAG
Seq A exon
GTAAGAGGCTCTGGCAGGCTTCCCTCCCCGTCCCCCAGCTGACAGCTCCCACAGGAGTATCTGCAGCCAGCTTAGATGAGAAAACCACCTGTGACTGTGAGCGAGCGGGAGACAGAATGCAGGAACAAGTACCAGTGAGCTCTCTGACACCCTCCCATTCCCCGGCCTGGTTCTCTACCCAGCTGGCTGGCATTTCCCCAGCTCCTGTGCTGGCAGTGTCTGCCCCTGTCACAGCCCACCCTGGGCCCTAGGCAGAGCCAGAGTCCTTGGGGAAGCAGGAGCGCCCAGGGAGCTGACTCTTGGGTGGTATTTCCTTTGCCCAGCTACTCCGCTCTTGGGGACTGAAGCAAGGCCAGTTAGGGAACAGAGGAGTCACTGAGTGCCAAGGAAAACGGGAAGGGTAGAGTGTGCAGATCATGGCAAGACCACCTTCCCGTCTCCCAGCTTCTGGGCTAGCCTGGTCAGATGCTTGGCTGCCCTCTTCTCTGCCAGGAGGGGGAAGGGCAGTGCCCTGACACCCTTCCTCTTTGGGCTGCTGGCGGTGGGCACAG
Seq C2 exon
GTCCTAGATGAGGTGGAGCGCCGGCGTGGGATCTCCGCTGCATTGGTCTATCCTTTCATGAGAAGTCTCATGGAGTCGCCCTTCCCAGCCCCAGGGAAGACCATCAAAGTGAAGACATTCCTGCCAGGTGCTGGCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166444:ENST00000534127:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PU(10.3=73.1)
A:
NA
C2:
PF0214116=DENN=FE(24.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGCCAGAGGTGTACTGTG
R:
GCACCTGGCAGGAATGTCTTC
Band lengths:
190-741
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains