RnoINT0144170 @ rn6
Intron Retention
Gene
ENSRNOG00000013934 | St5
Description
suppression of tumorigenicity 5 [Source:RGD Symbol;Acc:1308995]
Coordinates
chr1:174148024-174148738:-
Coord C1 exon
chr1:174148661-174148738
Coord A exon
chr1:174148165-174148660
Coord C2 exon
chr1:174148024-174148164
Length
496 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GCTGCTGGTGGTGTGCACAGGTC
3' ss Score
5.79
Exon sequences
Seq C1 exon
CCAAATGGGAAAGGGCCTCGGTTGCCAGAGGTGTACTGTGTCATCAGCCGCCTAGGCTGCTTCGGCCTGTTTTCCAAG
Seq A exon
GTAAGAGATGCTGTCTTTCCCCCATCTCAGACAGCTCTCATAGGAGTATCTGCAGATGCCGAGATAAGAAAATGACCTGTGTGAGAGACAGGGCATACAGAGCAAGTATGTGGGCTCTCAGAGGCCTGTCTTCCCGAGCCTGGCTTACTGCCCAGCTAGCTGGCATTTCCCCAACTCCTGGGTTGACAGTGCCTGCTCTGTAGTGGCCCAGCCTGGAGTCCTTGGAGTCCAGGGGTGCCCAGGAAGCTGTTTCACGGTGCTATTTCTTTTGCCCCATCATTCCCTTCTTGGGGACTAAAGCAGGCCAGCAAGGGAAGTGAATGGCCACGGAGGCCAAGAGAAACAAGACAGGTACAGAGACAGCAGCAGGACAGCTTTTTTGTCTCCTGGTTTCTGGTCCAGCTTGGTCAGAGGCTGGGTTGCCCTCTTCTCTGTCAAGGAGGTGGAGAAGGCGCTCCCAACACTCTTTCCTTTGGGCTGCTGGTGGTGTGCACAG
Seq C2 exon
GTCCTAGATGAGGTGGAGCGCCGGCGTGGAATCTCAGCTGCTCTGGTCTACCCCTTTATGAGAAGTCTCATGGAATCGCCCTTTCCAGCCCCAGGGAAAACCATCAAAGTGAAGACATTCCTGCCTGGTGCTGGCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013934:ENSRNOT00000064902:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PU(10.3=73.1)
A:
NA
C2:
PF0214116=DENN=FE(24.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGGGAAAGGGCCTCGGTT
R:
CTCATTGCCAGCACCAGG
Band lengths:
217-713
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]