HsaINT0159814 @ hg19
Intron Retention
Gene
ENSG00000166444 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:11350]
Coordinates
chr11:8728632-8729401:-
Coord C1 exon
chr11:8729324-8729401
Coord A exon
chr11:8728773-8729323
Coord C2 exon
chr11:8728632-8728772
Length
551 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GCTGCTGGCGGTGGGCACAGGTC
3' ss Score
2.59
Exon sequences
Seq C1 exon
CCAAGTGGGAAAGGGCCCCGGTTGCCAGAGGTGTACTGTGTCATCAGCCGCCTTGGCTGCTTCGGCTTGTTTTCCAAG
Seq A exon
GTAAGAGGCTCTGGCAGGCTTCCCTCCCCGTCCCCCAGCTGACAGCTCCCACAGGAGTATCTGCAGCCAGCTTAGATGAGAAAACCACCTGTGACTGTGAGCGAGCGGGAGACAGAATGCAGGAACAAGTACCAGTGAGCTCTCTGACACCCTCCCATTCCCCGGCCTGGTTCTCTACCCAGCTGGCTGGCATTTCCCCAGCTCCTGTGCTGGCAGTGTCTGCCCCTGTCACAGCCCACCCTGGGCCCTAGGCAGAGCCAGAGTCCTTGGGGAAGCAGGAGCGCCCAGGGAGCTGACTCTTGGGTGGTATTTCCTTTGCCCAGCTACTCCGCTCTTGGGGACTGAAGCAAGGCCAGTTAGGGAACAGAGGAGTCACTGAGTGCCAAGGAAAACGGGAAGGGTAGAGTGTGCAGATCATGGCAAGACCACCTTCCCGTCTCCCAGCTTCTGGGCTAGCCTGGTCAGATGCTTGGCTGCCCTCTTCTCTGCCAGGAGGGGGAAGGGCAGTGCCCTGACACCCTTCCTCTTTGGGCTGCTGGCGGTGGGCACAG
Seq C2 exon
GTCCTAGATGAGGTGGAGCGCCGGCGTGGGATCTCCGCTGCATTGGTCTATCCTTTCATGAGAAGTCTCATGGAGTCGCCCTTCCCAGCCCCAGGGAAGACCATCAAAGTGAAGACATTCCTGCCAGGTGCTGGCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166444-ST5:NM_213618:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PU(10.3=73.1)
A:
NA
C2:
PF0214116=DENN=PU(27.9=97.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGCCAGAGGTGTACTGTG
R:
GCACCTGGCAGGAATGTCTTC
Band lengths:
190-741
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)