DreINT0156549 @ danRer10
Intron Retention
Gene
ENSDARG00000037363 | st5
Description
suppression of tumorigenicity 5 [Source:ZFIN;Acc:ZDB-GENE-030131-2547]
Coordinates
chr7:28216650-28217388:-
Coord C1 exon
chr7:28217311-28217388
Coord A exon
chr7:28216791-28217310
Coord C2 exon
chr7:28216650-28216790
Length
520 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TATGCTTTCGTTTATTACAGATT
3' ss Score
10.47
Exon sequences
Seq C1 exon
CCGAGTGGGAAAGGGCCTCGCCTTCCTGAAGTCTATTGTGTCATCAGTCGACTGGGCTGTTTCAACCTGTTTTCCAAG
Seq A exon
GTGAGCTCAGGCTTGCTCTCTCTTTCACACACACATACACACAAACACACACCTCCACATGGTCTCTCTGGCTGTCAGACATGGGCACAGCTGCAGCAAGGCTTGTGTTGGCATTGACCAACATCCAACTTAGTACATCTGTCTTTCTCTCTGGCCTATTAAACCAATATTATTTCCTTCACTTCCACCTTCCACTGGAGGGAAAGTGAGGAAGTCAAAAACCAACTTGCATCCAACTTTTGTTATTATAATATTCAGTGGAAATTGAAAGTGCTAGTTTTCGTCACTCTGATTTTACACCCTCATGTAGCAGATGAAAACCATGACTTGTAAGTGACAGGTTAGAATTCCAGAGACTTCCGCACTCATATATCTGACGGGAAAGAAGAAACAGACCACATAAAATCCATCAGTTTTTTGTAACGTGTAAAGCCAGTAGCAGTGTCACAGTCTGCATGTAATGCCTGCTGTTGTCGTTTTTTTTTTCTCCATCAGCTTATTATGCTTTCGTTTATTACAG
Seq C2 exon
ATTCTTGATGAGGTGGAGAGGAGGAGAGGGATCTCAGCTGCGCTGGTGTATCCTTTCATGAGAAGTGTGATGGAGTCGCCTTTCCCAGCACCAGGCAAAACCATAAAAGTCAAAACCTTCCTGCCTGGAGCAGGAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037363:ENSDART00000133050:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PU(10.3=73.1)
A:
NA
C2:
PF0214116=DENN=FE(24.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGTGGGAAAGGGCCT
R:
CCAGGCAGGAAGGTTTTGACT
Band lengths:
206-726
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]